Variant report

Variant	rs10756733
Chromosome Location	chr9:16018591-16018592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs10733306	0.93[AFR][1000 genomes]
rs10733307	0.93[AFR][1000 genomes]
rs10738417	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10738418	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738419	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10738420	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10738421	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10738422	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10738423	0.94[ASN][1000 genomes]
rs10738424	0.94[ASN][1000 genomes]
rs10738426	0.80[CEU][hapmap]
rs10738430	0.93[AFR][1000 genomes]
rs10756714	0.86[CHB][hapmap]
rs10756715	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10756720	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10756722	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs10756723	0.85[AFR][1000 genomes]
rs10756724	0.96[CEU][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756725	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756726	0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756728	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756729	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10756730	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10756731	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10756734	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756735	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10756736	0.94[ASN][1000 genomes]
rs10756739	0.90[ASN][1000 genomes]
rs10756742	0.93[AFR][1000 genomes]
rs10810461	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10810462	0.86[CEU][hapmap]
rs10810479	0.88[CEU][hapmap]
rs10810483	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs10810484	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10810485	0.89[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10810486	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs10810487	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs10810488	0.88[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs10810494	0.88[CEU][hapmap];0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10810497	0.86[AFR][1000 genomes]
rs10810498	0.86[AFR][1000 genomes]
rs10810501	0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810502	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810503	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810505	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810506	0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810507	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810508	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810509	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810510	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810514	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10810518	0.81[ASN][1000 genomes]
rs10810519	0.94[ASN][1000 genomes]
rs10810520	0.94[ASN][1000 genomes]
rs10810521	0.94[ASN][1000 genomes]
rs10810522	0.93[ASN][1000 genomes]
rs10810523	0.93[ASN][1000 genomes]
rs10810524	0.90[ASN][1000 genomes]
rs10810526	0.85[CHB][hapmap];0.91[JPT][hapmap];0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10810528	0.93[AFR][1000 genomes]
rs10962225	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs10962227	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs10962244	0.88[ASN][1000 genomes]
rs10962256	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11788695	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12379234	0.88[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs12379466	0.95[ASN][1000 genomes]
rs1328269	0.83[ASN][1000 genomes]
rs1328273	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1328274	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1328276	0.93[ASN][1000 genomes]
rs1328278	0.94[ASN][1000 genomes]
rs1328279	0.94[ASN][1000 genomes]
rs1328280	0.94[ASN][1000 genomes]
rs1328283	0.93[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1328296	0.93[AFR][1000 genomes]
rs1341732	0.81[CHB][hapmap]
rs1359951	0.86[ASN][1000 genomes]
rs1359952	0.80[CHB][hapmap]
rs1359954	0.89[ASN][1000 genomes]
rs1359957	0.87[AFR][1000 genomes]
rs1410444	0.89[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap]
rs1410450	0.90[ASN][1000 genomes]
rs1410451	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1590749	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1590750	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1887664	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1887666	0.94[ASN][1000 genomes]
rs1887668	0.93[ASN][1000 genomes]
rs1927698	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2017943	0.83[ASN][1000 genomes]
rs2026661	0.93[AFR][1000 genomes]
rs2149233	0.87[AFR][1000 genomes]
rs2225182	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2891003	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2987009	0.86[JPT][hapmap]
rs2987010	0.86[JPT][hapmap]
rs2987011	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2987012	0.86[JPT][hapmap]
rs2987013	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2987014	0.86[JPT][hapmap]
rs2987023	0.81[ASN][1000 genomes]
rs2987039	0.84[ASN][1000 genomes]
rs2987041	0.84[ASN][1000 genomes]
rs2987042	0.84[ASN][1000 genomes]
rs2987079	0.83[ASN][1000 genomes]
rs2987081	0.84[ASN][1000 genomes]
rs2987086	0.84[ASN][1000 genomes]
rs2987096	0.83[ASN][1000 genomes]
rs2987099	0.90[ASN][1000 genomes]
rs3008666	0.86[JPT][hapmap]
rs3008681	0.82[JPT][hapmap]
rs3008710	0.90[ASN][1000 genomes]
rs3008715	0.90[ASN][1000 genomes]
rs3008717	0.90[ASN][1000 genomes]
rs3008719	0.84[ASN][1000 genomes]
rs3008723	0.84[ASN][1000 genomes]
rs3008726	0.84[ASN][1000 genomes]
rs3008727	0.84[ASN][1000 genomes]
rs3008728	0.84[ASN][1000 genomes]
rs3008729	0.83[ASN][1000 genomes]
rs3008730	0.84[ASN][1000 genomes]
rs3008732	0.82[ASN][1000 genomes]
rs3008747	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3008748	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs3008749	0.86[JPT][hapmap]
rs3008753	0.86[JPT][hapmap]
rs3824502	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247294	0.94[ASN][1000 genomes]
rs4472620	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4475627	0.83[ASN][1000 genomes]
rs4582646	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs4740628	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4740629	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4740632	0.94[ASN][1000 genomes]
rs4741548	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs4741552	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4741553	0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4741557	0.94[ASN][1000 genomes]
rs4741558	0.89[ASN][1000 genomes]
rs4741561	0.93[AFR][1000 genomes]
rs4961433	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4961526	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs723756	0.84[ASN][1000 genomes]
rs752489	0.93[ASN][1000 genomes]
rs752490	0.94[ASN][1000 genomes]
rs769151	0.88[CEU][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9406581	0.84[ASN][1000 genomes]
rs943787	0.94[ASN][1000 genomes]
rs943788	0.94[ASN][1000 genomes]
rs943789	0.94[ASN][1000 genomes]
rs961117	0.89[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs9792412	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9969685	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9969791	0.93[CEU][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9969816	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9969817	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16018200-16028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:16018400-16022400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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