Variant report

Variant	rs10738421
Chromosome Location	chr9:15975380-15975381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10738418	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10738419	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10738420	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10738422	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10738423	0.87[AMR][1000 genomes]
rs10738424	0.87[AMR][1000 genomes]
rs10756720	0.82[AMR][1000 genomes]
rs10756724	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756725	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756726	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756728	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10756729	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10756730	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10756731	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10756733	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10756734	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10756735	0.88[AMR][1000 genomes]
rs10756736	0.87[AMR][1000 genomes]
rs10756739	0.85[AMR][1000 genomes]
rs10810485	0.80[AMR][1000 genomes]
rs10810494	0.81[EUR][1000 genomes]
rs10810498	0.80[ASN][1000 genomes]
rs10810501	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810502	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810503	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810505	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810506	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810507	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810508	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810509	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810510	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810514	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810517	0.80[AMR][1000 genomes]
rs10810518	0.86[AMR][1000 genomes]
rs10810519	0.84[AMR][1000 genomes]
rs10810520	0.86[AMR][1000 genomes]
rs10810521	0.87[AMR][1000 genomes]
rs10810522	0.87[AMR][1000 genomes]
rs10810523	0.82[AMR][1000 genomes]
rs10810524	0.85[AMR][1000 genomes]
rs10810526	0.85[AMR][1000 genomes]
rs10962244	0.91[ASN][1000 genomes]
rs10962256	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11788695	0.85[AMR][1000 genomes]
rs12379466	0.86[AMR][1000 genomes]
rs1328265	0.84[ASN][1000 genomes]
rs1328273	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1328274	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1328276	0.86[AMR][1000 genomes]
rs1328277	0.83[AMR][1000 genomes]
rs1328278	0.87[AMR][1000 genomes]
rs1328279	0.87[AMR][1000 genomes]
rs1328280	0.87[AMR][1000 genomes]
rs1328296	0.81[AMR][1000 genomes]
rs1359954	0.81[AMR][1000 genomes]
rs1359957	0.81[AMR][1000 genomes]
rs1410444	0.80[AMR][1000 genomes]
rs1410450	0.85[AMR][1000 genomes]
rs1410451	0.82[AMR][1000 genomes]
rs1576171	0.82[ASN][1000 genomes]
rs1590749	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1590750	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1887664	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1887666	0.87[AMR][1000 genomes]
rs1887667	0.81[AMR][1000 genomes]
rs1887668	0.87[AMR][1000 genomes]
rs1927699	0.83[ASN][1000 genomes]
rs1927700	0.83[ASN][1000 genomes]
rs1927701	0.83[ASN][1000 genomes]
rs1927702	0.83[ASN][1000 genomes]
rs2026661	0.82[AMR][1000 genomes]
rs2182936	0.82[AMR][1000 genomes]
rs2225182	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2382543	0.83[ASN][1000 genomes]
rs2382544	0.83[ASN][1000 genomes]
rs2382545	0.80[ASN][1000 genomes]
rs2891003	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2987008	0.81[ASN][1000 genomes]
rs2987009	0.82[ASN][1000 genomes]
rs2987010	0.83[ASN][1000 genomes]
rs2987011	0.83[ASN][1000 genomes]
rs2987012	0.83[ASN][1000 genomes]
rs2987013	0.82[ASN][1000 genomes]
rs2987014	0.83[ASN][1000 genomes]
rs2987016	0.83[ASN][1000 genomes]
rs2987017	0.83[ASN][1000 genomes]
rs2987019	0.83[ASN][1000 genomes]
rs2987020	0.83[ASN][1000 genomes]
rs2987021	0.83[ASN][1000 genomes]
rs2987022	0.83[ASN][1000 genomes]
rs2987023	0.81[ASN][1000 genomes]
rs2987024	0.83[ASN][1000 genomes]
rs2987025	0.82[ASN][1000 genomes]
rs3008736	0.83[ASN][1000 genomes]
rs3008739	0.82[ASN][1000 genomes]
rs3008742	0.81[ASN][1000 genomes]
rs3008744	0.84[ASN][1000 genomes]
rs3008745	0.85[ASN][1000 genomes]
rs3008747	0.84[ASN][1000 genomes]
rs3008748	0.83[ASN][1000 genomes]
rs3008749	0.83[ASN][1000 genomes]
rs3008753	0.81[ASN][1000 genomes]
rs3118736	0.83[ASN][1000 genomes]
rs3824502	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4247294	0.87[AMR][1000 genomes]
rs4472620	0.80[AMR][1000 genomes]
rs4740629	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4740631	0.81[AMR][1000 genomes]
rs4740632	0.87[AMR][1000 genomes]
rs4741552	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4741553	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4741557	0.87[AMR][1000 genomes]
rs4741558	0.82[AMR][1000 genomes]
rs4741560	0.82[AMR][1000 genomes]
rs4741561	0.81[AMR][1000 genomes]
rs4961433	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6474987	0.81[ASN][1000 genomes]
rs6474988	0.81[ASN][1000 genomes]
rs6474989	0.82[ASN][1000 genomes]
rs7023326	0.83[ASN][1000 genomes]
rs752489	0.87[AMR][1000 genomes]
rs752490	0.87[AMR][1000 genomes]
rs769151	0.81[EUR][1000 genomes]
rs9407702	0.83[ASN][1000 genomes]
rs943787	0.87[AMR][1000 genomes]
rs943788	0.87[AMR][1000 genomes]
rs943789	0.87[AMR][1000 genomes]
rs961117	0.85[AMR][1000 genomes]
rs9792412	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9969685	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9969791	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9969816	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9969817	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs997410	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15952600-15987600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15973000-15977200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15973200-15988000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:15974800-15976200	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links