Variant report

Variant	rs2987024
Chromosome Location	chr9:15986795-15986796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 180 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10738417	0.89[JPT][hapmap]
rs10738418	0.82[ASN][1000 genomes]
rs10738419	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10738420	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10738421	0.83[ASN][1000 genomes]
rs10738422	0.85[ASN][1000 genomes]
rs10756714	0.84[JPT][hapmap]
rs10756715	0.89[JPT][hapmap]
rs10756720	0.89[JPT][hapmap]
rs10756722	0.90[JPT][hapmap]
rs10756724	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs10756725	0.84[ASN][1000 genomes]
rs10756726	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10756728	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10756729	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10756730	0.89[ASN][1000 genomes]
rs10756731	0.89[ASN][1000 genomes]
rs1080485	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810455	0.83[JPT][hapmap]
rs10810461	0.89[JPT][hapmap]
rs10810479	0.83[JPT][hapmap]
rs10810483	0.90[JPT][hapmap]
rs10810484	0.89[JPT][hapmap]
rs10810485	0.89[JPT][hapmap]
rs10810486	0.94[JPT][hapmap]
rs10810487	0.95[JPT][hapmap]
rs10810488	0.94[JPT][hapmap]
rs10810501	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10810502	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10810503	0.83[ASN][1000 genomes]
rs10810505	0.84[ASN][1000 genomes]
rs10810506	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10810507	0.84[ASN][1000 genomes]
rs10810508	0.83[ASN][1000 genomes]
rs10810509	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10810510	0.84[ASN][1000 genomes]
rs10810514	0.85[ASN][1000 genomes]
rs10810526	0.83[JPT][hapmap]
rs10962225	0.90[JPT][hapmap]
rs10962227	0.95[JPT][hapmap]
rs10962244	0.89[ASN][1000 genomes]
rs1169476	0.84[YRI][hapmap]
rs1169478	0.96[CEU][hapmap]
rs1169479	0.95[CEU][hapmap]
rs1169480	0.95[CEU][hapmap]
rs12379234	0.89[JPT][hapmap]
rs1328265	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1328269	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1328271	0.96[EUR][1000 genomes]
rs1328283	0.89[JPT][hapmap]
rs1328286	0.91[CEU][hapmap];0.89[JPT][hapmap]
rs1328288	0.85[CEU][hapmap]
rs1341732	0.88[JPT][hapmap]
rs1359950	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1359951	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1359952	0.89[JPT][hapmap]
rs1359953	0.84[CEU][hapmap]
rs1410444	0.95[JPT][hapmap]
rs1410451	0.83[JPT][hapmap]
rs1576171	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1590749	0.82[ASN][1000 genomes]
rs1590750	0.83[ASN][1000 genomes]
rs1887664	0.85[ASN][1000 genomes]
rs1927696	0.89[JPT][hapmap]
rs1927698	0.90[JPT][hapmap]
rs1927699	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017943	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2094522	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2149231	0.89[EUR][1000 genomes]
rs2225181	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs2225182	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2382543	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2382544	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2382545	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2382546	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2382547	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2382548	0.95[EUR][1000 genomes]
rs2794634	0.95[CEU][hapmap]
rs2794636	0.95[CEU][hapmap]
rs2860316	0.98[EUR][1000 genomes]
rs2891003	0.88[ASN][1000 genomes]
rs2987008	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987009	0.84[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987010	0.87[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987011	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987012	0.84[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987013	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987014	0.83[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987016	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987017	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987018	0.98[EUR][1000 genomes]
rs2987019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2987037	0.84[AFR][1000 genomes]
rs2987039	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987040	0.84[AFR][1000 genomes]
rs2987041	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987042	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987043	0.84[AFR][1000 genomes]
rs2987069	0.84[CEU][hapmap]
rs2987070	0.88[CEU][hapmap]
rs2987071	1.00[CEU][hapmap]
rs2987072	0.87[CEU][hapmap]
rs2987079	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987081	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987086	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987090	0.93[EUR][1000 genomes]
rs2987096	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987098	0.89[EUR][1000 genomes]
rs2987099	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008666	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3008672	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3008681	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs3008686	1.00[CEU][hapmap]
rs3008710	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008714	0.96[EUR][1000 genomes]
rs3008715	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008717	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008719	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008723	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008726	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008727	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008728	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008729	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3008730	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008732	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3008736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008738	0.87[ASN][1000 genomes]
rs3008739	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3008742	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3008744	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3008745	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3008747	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3008748	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3008749	0.84[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008753	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3118736	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442245	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4472620	0.89[JPT][hapmap]
rs4475627	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4582646	0.90[JPT][hapmap]
rs4740628	0.89[JPT][hapmap]
rs4740629	0.89[ASN][1000 genomes]
rs4741548	0.89[JPT][hapmap]
rs4741552	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4741553	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6474974	0.82[CHB][hapmap]
rs6474987	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6474988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6474989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474996	0.81[AFR][1000 genomes]
rs7023326	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723756	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs735962	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs770191	0.82[CEU][hapmap]
rs770211	1.00[CEU][hapmap]
rs770213	1.00[CEU][hapmap]
rs770215	0.88[CEU][hapmap]
rs7849380	0.83[JPT][hapmap]
rs9406568	0.83[EUR][1000 genomes]
rs9406569	0.83[EUR][1000 genomes]
rs9406581	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9407697	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9407702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961117	0.89[JPT][hapmap]
rs9969685	0.83[ASN][1000 genomes]
rs9969791	0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs9969816	0.84[ASN][1000 genomes]
rs9969817	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15952600-15987600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15973200-15988000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15986200-15986800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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