Variant report

Variant	rs6474996
Chromosome Location	chr9:15988823-15988824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1169469	0.85[ASN][1000 genomes]
rs1169471	0.85[ASN][1000 genomes]
rs1169472	0.85[ASN][1000 genomes]
rs1169475	0.93[ASN][1000 genomes]
rs1169476	0.93[ASN][1000 genomes]
rs1169477	0.93[ASN][1000 genomes]
rs1169481	0.93[ASN][1000 genomes]
rs1184568	0.85[ASN][1000 genomes]
rs1184913	0.93[ASN][1000 genomes]
rs1186048	0.93[ASN][1000 genomes]
rs1186387	0.93[ASN][1000 genomes]
rs1328285	0.93[ASN][1000 genomes]
rs16933738	0.85[ASN][1000 genomes]
rs1773062	0.93[ASN][1000 genomes]
rs1891209	0.85[ASN][1000 genomes]
rs1927699	0.81[AFR][1000 genomes]
rs1927700	0.81[AFR][1000 genomes]
rs1927701	0.81[AFR][1000 genomes]
rs1927702	0.81[AFR][1000 genomes]
rs1935223	0.93[ASN][1000 genomes]
rs2094520	0.93[ASN][1000 genomes]
rs2182934	0.93[ASN][1000 genomes]
rs2182935	0.93[ASN][1000 genomes]
rs2769714	0.85[ASN][1000 genomes]
rs2769716	0.93[ASN][1000 genomes]
rs2987019	0.81[AFR][1000 genomes]
rs2987020	0.81[AFR][1000 genomes]
rs2987021	0.81[AFR][1000 genomes]
rs2987022	0.81[AFR][1000 genomes]
rs2987024	0.81[AFR][1000 genomes]
rs2987037	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987040	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987043	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987044	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987053	0.85[ASN][1000 genomes]
rs2987054	0.93[ASN][1000 genomes]
rs2987057	0.93[ASN][1000 genomes]
rs2987063	0.93[ASN][1000 genomes]
rs2987065	0.93[ASN][1000 genomes]
rs2987066	0.93[ASN][1000 genomes]
rs2987073	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987076	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2987077	0.93[ASN][1000 genomes]
rs3008669	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3008680	0.93[ASN][1000 genomes]
rs3008682	0.93[ASN][1000 genomes]
rs3008683	0.93[ASN][1000 genomes]
rs3008700	0.80[ASN][1000 genomes]
rs3008706	0.93[ASN][1000 genomes]
rs3008708	0.93[ASN][1000 genomes]
rs3008712	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008736	0.81[AFR][1000 genomes]
rs3008737	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3124458	0.86[ASN][1000 genomes]
rs3750402	0.93[ASN][1000 genomes]
rs6474987	0.81[AFR][1000 genomes]
rs6474988	0.81[AFR][1000 genomes]
rs6474989	0.81[AFR][1000 genomes]
rs7469281	0.93[ASN][1000 genomes]
rs770203	0.93[ASN][1000 genomes]
rs770206	0.85[ASN][1000 genomes]
rs770210	0.85[ASN][1000 genomes]
rs770212	0.85[ASN][1000 genomes]
rs770214	0.85[ASN][1000 genomes]
rs770217	0.93[ASN][1000 genomes]
rs770218	0.85[ASN][1000 genomes]
rs961116	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15987800-15989000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:15988600-15989000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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