Variant report

Variant	rs2987043
Chromosome Location	chr9:16002831-16002832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1080484	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1169469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1169471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1169472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1169475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1169476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[ASN][1000 genomes]
rs1169477	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1169481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1184568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1184913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1186048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1186387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1328285	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1341733	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16933738	0.85[ASN][1000 genomes]
rs1773062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1891209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1927699	0.84[AFR][1000 genomes]
rs1927700	0.84[AFR][1000 genomes]
rs1927701	0.84[AFR][1000 genomes]
rs1927702	0.84[AFR][1000 genomes]
rs1935223	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2094520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2182934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2182935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2769714	0.85[ASN][1000 genomes]
rs2769716	0.93[ASN][1000 genomes]
rs2987013	0.90[YRI][hapmap]
rs2987019	0.84[AFR][1000 genomes]
rs2987020	0.84[AFR][1000 genomes]
rs2987021	0.84[AFR][1000 genomes]
rs2987022	0.84[AFR][1000 genomes]
rs2987023	0.80[AFR][1000 genomes]
rs2987024	0.84[AFR][1000 genomes]
rs2987025	0.82[AFR][1000 genomes]
rs2987037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987044	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987053	0.85[ASN][1000 genomes]
rs2987054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2987057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2987063	0.93[ASN][1000 genomes]
rs2987065	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2987066	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs2987073	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2987076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2987077	0.93[ASN][1000 genomes]
rs3008669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3008680	0.93[ASN][1000 genomes]
rs3008682	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3008683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3008700	0.80[ASN][1000 genomes]
rs3008706	0.93[ASN][1000 genomes]
rs3008708	0.93[ASN][1000 genomes]
rs3008712	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008736	0.84[AFR][1000 genomes]
rs3008737	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118736	0.82[AFR][1000 genomes]
rs3124458	0.86[ASN][1000 genomes]
rs3750402	0.93[ASN][1000 genomes]
rs6474987	0.83[AFR][1000 genomes]
rs6474988	0.84[AFR][1000 genomes]
rs6474989	0.84[AFR][1000 genomes]
rs6474996	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7469281	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs770203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs770206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs770209	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs770212	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs770214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs770216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770217	0.93[ASN][1000 genomes]
rs770218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9407702	0.80[AFR][1000 genomes]
rs961116	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15999000-16003200	Enhancers	NHDF-Ad	bronchial
2	chr9:15999000-16003600	Enhancers	HMEC	breast
3	chr9:15999800-16003600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:15999800-16003600	Enhancers	Osteobl	bone
5	chr9:15999800-16003800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:16000200-16003600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:16000200-16010400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:16000600-16003800	Weak transcription	HSMM	muscle
9	chr9:16001600-16011800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:16002000-16003400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:16002400-16012800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:16002800-16003400	Enhancers	A549	lung

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