Variant report

Variant	rs961116
Chromosome Location	chr9:15938370-15938371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1169469	0.92[ASN][1000 genomes]
rs1169471	0.92[ASN][1000 genomes]
rs1169472	0.92[ASN][1000 genomes]
rs1169475	1.00[ASN][1000 genomes]
rs1169476	1.00[ASN][1000 genomes]
rs1169477	1.00[ASN][1000 genomes]
rs1169481	1.00[ASN][1000 genomes]
rs1169482	0.85[ASN][1000 genomes]
rs1184568	0.92[ASN][1000 genomes]
rs1184913	1.00[ASN][1000 genomes]
rs1186048	1.00[ASN][1000 genomes]
rs1186387	1.00[ASN][1000 genomes]
rs1328285	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1341733	0.85[ASN][1000 genomes]
rs16933738	0.92[ASN][1000 genomes]
rs1773062	1.00[ASN][1000 genomes]
rs1891209	0.92[ASN][1000 genomes]
rs1935223	1.00[ASN][1000 genomes]
rs2094520	1.00[ASN][1000 genomes]
rs2182934	1.00[ASN][1000 genomes]
rs2182935	1.00[ASN][1000 genomes]
rs2769714	0.92[ASN][1000 genomes]
rs2769716	1.00[ASN][1000 genomes]
rs2794638	0.85[ASN][1000 genomes]
rs2987037	0.93[ASN][1000 genomes]
rs2987040	0.93[ASN][1000 genomes]
rs2987043	0.93[ASN][1000 genomes]
rs2987044	0.93[ASN][1000 genomes]
rs2987046	0.85[ASN][1000 genomes]
rs2987053	0.92[ASN][1000 genomes]
rs2987054	1.00[ASN][1000 genomes]
rs2987057	1.00[ASN][1000 genomes]
rs2987063	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2987065	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987066	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987073	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987076	1.00[ASN][1000 genomes]
rs2987077	0.85[ASN][1000 genomes]
rs3008669	1.00[ASN][1000 genomes]
rs3008680	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008682	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3008683	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008700	0.86[ASN][1000 genomes]
rs3008706	0.85[ASN][1000 genomes]
rs3008708	0.85[ASN][1000 genomes]
rs3008712	0.93[ASN][1000 genomes]
rs3008737	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3750402	1.00[ASN][1000 genomes]
rs6474996	0.93[ASN][1000 genomes]
rs7469281	1.00[ASN][1000 genomes]
rs770203	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs770206	0.92[ASN][1000 genomes]
rs770210	0.92[ASN][1000 genomes]
rs770212	0.92[ASN][1000 genomes]
rs770214	0.92[ASN][1000 genomes]
rs770217	1.00[ASN][1000 genomes]
rs770218	0.92[ASN][1000 genomes]
rs7860856	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15930400-15938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15933200-15951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15936400-15939000	Weak transcription	Fetal Kidney	kidney
4	chr9:15936800-15946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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