Variant report

Variant	rs3124458
Chromosome Location	chr9:16022186-16022187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1080484	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap]
rs1169469	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1169471	1.00[CHB][hapmap]
rs1169472	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs1169475	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[YRI][hapmap]
rs1169476	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1169477	1.00[CHB][hapmap]
rs1169481	1.00[CHB][hapmap]
rs1184568	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1184913	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[YRI][hapmap]
rs1186048	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1186387	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[YRI][hapmap]
rs1328285	0.88[CHD][hapmap]
rs1341733	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs1773062	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[YRI][hapmap]
rs1891209	1.00[CHB][hapmap]
rs1935223	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2094520	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2182934	1.00[CHB][hapmap]
rs2182935	1.00[CHB][hapmap]
rs2987037	0.86[ASN][1000 genomes]
rs2987040	0.86[ASN][1000 genomes]
rs2987043	0.86[ASN][1000 genomes]
rs2987044	0.86[ASN][1000 genomes]
rs2987054	1.00[CHB][hapmap]
rs2987057	1.00[CHB][hapmap]
rs2987065	1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[MEX][hapmap]
rs2987066	1.00[CHB][hapmap]
rs2987076	1.00[CHB][hapmap]
rs2987077	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3008669	1.00[CHB][hapmap]
rs3008682	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[MEX][hapmap]
rs3008683	1.00[CHB][hapmap]
rs3008705	0.96[LWK][hapmap];0.92[YRI][hapmap]
rs3008706	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3008708	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3008712	0.86[ASN][1000 genomes]
rs3008737	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6474996	0.86[ASN][1000 genomes]
rs7469281	1.00[CHB][hapmap]
rs770203	1.00[CHB][hapmap]
rs770206	1.00[CHB][hapmap]
rs770209	1.00[CHB][hapmap];0.92[YRI][hapmap]
rs770210	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs770212	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs770214	1.00[CHB][hapmap]
rs770216	1.00[CHB][hapmap]
rs770218	1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16018200-16028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:16018400-16022400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:16019600-16022400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16019800-16024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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