Variant report

Variant	rs770209
Chromosome Location	chr9:15887778-15887779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1080484	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1081247	0.80[CEU][hapmap]
rs1169469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1169470	0.80[CEU][hapmap]
rs1169471	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1169472	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1169475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1169476	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1169477	1.00[CHB][hapmap]
rs1169481	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1177611	0.80[CEU][hapmap]
rs1184568	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1184913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1186048	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1186387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1328285	1.00[JPT][hapmap]
rs1341733	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1773062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1815697	0.80[CEU][hapmap]
rs1891209	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1935220	1.00[CEU][hapmap]
rs1935223	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2094520	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2105314	0.80[CEU][hapmap]
rs2182934	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2182935	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2794624	0.80[CEU][hapmap]
rs2794628	0.80[CEU][hapmap]
rs2794632	1.00[CEU][hapmap]
rs2794633	1.00[CEU][hapmap]
rs2987054	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2987057	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2987060	0.80[CEU][hapmap]
rs2987061	0.80[CEU][hapmap]
rs2987065	1.00[CHB][hapmap]
rs2987066	1.00[CHB][hapmap]
rs2987076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3008669	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3008682	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3008683	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3008691	0.80[CEU][hapmap]
rs3008693	0.80[CEU][hapmap]
rs3008698	0.80[CEU][hapmap]
rs3008705	0.84[YRI][hapmap]
rs6474979	0.80[CEU][hapmap]
rs7388793	0.80[CEU][hapmap]
rs7469281	1.00[CHB][hapmap]
rs770195	1.00[CEU][hapmap]
rs770196	0.80[CEU][hapmap]
rs770197	0.80[CEU][hapmap]
rs770198	0.80[CEU][hapmap]
rs770199	0.80[CEU][hapmap]
rs770200	0.80[CEU][hapmap]
rs770201	0.80[CEU][hapmap]
rs770202	0.80[CEU][hapmap]
rs770203	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770206	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs770219	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15877600-15888400	Weak transcription	Pancreas	Pancrea
3	chr9:15884200-15891800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:15884200-15892200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:15885800-15892200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:15886000-15889000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15886800-15889000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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