Variant report

Variant	rs9406568
Chromosome Location	chr9:15947830-15947831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1080485	0.87[EUR][1000 genomes]
rs1328265	0.84[EUR][1000 genomes]
rs1328269	0.83[EUR][1000 genomes]
rs1328271	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1576171	0.83[EUR][1000 genomes]
rs1927699	0.83[EUR][1000 genomes]
rs1927700	0.83[EUR][1000 genomes]
rs1927701	0.83[EUR][1000 genomes]
rs1927702	0.83[EUR][1000 genomes]
rs2017943	0.83[EUR][1000 genomes]
rs2094522	0.83[EUR][1000 genomes]
rs2149231	0.89[EUR][1000 genomes]
rs2382543	0.83[EUR][1000 genomes]
rs2382544	0.83[EUR][1000 genomes]
rs2382545	0.80[EUR][1000 genomes]
rs2382547	0.82[EUR][1000 genomes]
rs2382548	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2860316	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2987008	0.81[EUR][1000 genomes]
rs2987009	0.82[EUR][1000 genomes]
rs2987010	0.87[EUR][1000 genomes]
rs2987011	0.86[EUR][1000 genomes]
rs2987012	0.84[EUR][1000 genomes]
rs2987013	0.82[EUR][1000 genomes]
rs2987014	0.80[EUR][1000 genomes]
rs2987016	0.84[EUR][1000 genomes]
rs2987017	0.83[EUR][1000 genomes]
rs2987018	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2987019	0.83[EUR][1000 genomes]
rs2987020	0.82[EUR][1000 genomes]
rs2987021	0.83[EUR][1000 genomes]
rs2987022	0.83[EUR][1000 genomes]
rs2987023	0.83[EUR][1000 genomes]
rs2987024	0.83[EUR][1000 genomes]
rs2987025	0.84[EUR][1000 genomes]
rs2987039	0.83[EUR][1000 genomes]
rs2987041	0.82[EUR][1000 genomes]
rs2987042	0.83[EUR][1000 genomes]
rs2987069	0.81[EUR][1000 genomes]
rs2987070	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2987071	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2987072	0.82[EUR][1000 genomes]
rs2987079	0.83[EUR][1000 genomes]
rs2987081	0.83[EUR][1000 genomes]
rs2987086	0.82[EUR][1000 genomes]
rs2987090	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2987096	0.83[EUR][1000 genomes]
rs3008666	0.87[EUR][1000 genomes]
rs3008672	0.87[EUR][1000 genomes]
rs3008678	0.82[EUR][1000 genomes]
rs3008714	0.85[EUR][1000 genomes]
rs3008715	0.83[EUR][1000 genomes]
rs3008717	0.82[EUR][1000 genomes]
rs3008719	0.83[EUR][1000 genomes]
rs3008723	0.83[EUR][1000 genomes]
rs3008726	0.83[EUR][1000 genomes]
rs3008727	0.83[EUR][1000 genomes]
rs3008728	0.83[EUR][1000 genomes]
rs3008729	0.81[EUR][1000 genomes]
rs3008730	0.83[EUR][1000 genomes]
rs3008732	0.83[EUR][1000 genomes]
rs3008736	0.83[EUR][1000 genomes]
rs3008739	0.83[EUR][1000 genomes]
rs3008742	0.82[EUR][1000 genomes]
rs3008744	0.82[EUR][1000 genomes]
rs3008745	0.82[EUR][1000 genomes]
rs3008747	0.81[EUR][1000 genomes]
rs3008748	0.85[EUR][1000 genomes]
rs3008749	0.84[EUR][1000 genomes]
rs3008753	0.85[EUR][1000 genomes]
rs3118736	0.83[EUR][1000 genomes]
rs4475627	0.83[EUR][1000 genomes]
rs6474987	0.83[EUR][1000 genomes]
rs6474988	0.83[EUR][1000 genomes]
rs6474989	0.83[EUR][1000 genomes]
rs723756	0.82[EUR][1000 genomes]
rs9406569	0.84[EUR][1000 genomes]
rs9406581	0.81[EUR][1000 genomes]
rs9407697	0.80[EUR][1000 genomes]
rs9407702	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3483970	chr9:15944147-15948125	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3483971	chr9:15944147-15948125	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15933200-15951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15943800-15954800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links