Variant report

Variant	rs2382548
Chromosome Location	chr9:15988947-15988948
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1080485	0.87[EUR][1000 genomes]
rs1328265	0.94[EUR][1000 genomes]
rs1328269	0.94[EUR][1000 genomes]
rs1328271	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13298860	0.81[AMR][1000 genomes]
rs13298936	0.81[AMR][1000 genomes]
rs1359950	0.86[EUR][1000 genomes]
rs1576171	0.95[EUR][1000 genomes]
rs1927699	0.95[EUR][1000 genomes]
rs1927700	0.95[EUR][1000 genomes]
rs1927701	0.95[EUR][1000 genomes]
rs1927702	0.95[EUR][1000 genomes]
rs2017943	0.94[EUR][1000 genomes]
rs2094522	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2149231	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2382543	0.95[EUR][1000 genomes]
rs2382544	0.95[EUR][1000 genomes]
rs2382545	0.92[EUR][1000 genomes]
rs2382546	0.84[EUR][1000 genomes]
rs2382547	0.94[EUR][1000 genomes]
rs2860316	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987008	0.84[EUR][1000 genomes]
rs2987009	0.86[EUR][1000 genomes]
rs2987010	0.88[EUR][1000 genomes]
rs2987011	0.89[EUR][1000 genomes]
rs2987012	0.89[EUR][1000 genomes]
rs2987013	0.93[EUR][1000 genomes]
rs2987014	0.91[EUR][1000 genomes]
rs2987016	0.95[EUR][1000 genomes]
rs2987017	0.95[EUR][1000 genomes]
rs2987018	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987019	0.95[EUR][1000 genomes]
rs2987020	0.94[EUR][1000 genomes]
rs2987021	0.95[EUR][1000 genomes]
rs2987022	0.95[EUR][1000 genomes]
rs2987023	0.95[EUR][1000 genomes]
rs2987024	0.95[EUR][1000 genomes]
rs2987025	0.96[EUR][1000 genomes]
rs2987039	0.94[EUR][1000 genomes]
rs2987041	0.93[EUR][1000 genomes]
rs2987042	0.94[EUR][1000 genomes]
rs2987070	0.81[ASN][1000 genomes]
rs2987071	0.81[ASN][1000 genomes]
rs2987072	0.80[ASN][1000 genomes]
rs2987079	0.94[EUR][1000 genomes]
rs2987081	0.94[EUR][1000 genomes]
rs2987086	0.93[EUR][1000 genomes]
rs2987090	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2987096	0.94[EUR][1000 genomes]
rs2987098	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2987099	0.88[EUR][1000 genomes]
rs3008666	0.88[EUR][1000 genomes]
rs3008672	0.86[EUR][1000 genomes]
rs3008710	0.88[EUR][1000 genomes]
rs3008714	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3008715	0.94[EUR][1000 genomes]
rs3008717	0.93[EUR][1000 genomes]
rs3008719	0.94[EUR][1000 genomes]
rs3008723	0.94[EUR][1000 genomes]
rs3008726	0.94[EUR][1000 genomes]
rs3008727	0.94[EUR][1000 genomes]
rs3008728	0.94[EUR][1000 genomes]
rs3008729	0.92[EUR][1000 genomes]
rs3008730	0.94[EUR][1000 genomes]
rs3008732	0.94[EUR][1000 genomes]
rs3008736	0.95[EUR][1000 genomes]
rs3008739	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3008742	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3008744	0.92[EUR][1000 genomes]
rs3008745	0.91[EUR][1000 genomes]
rs3008747	0.91[EUR][1000 genomes]
rs3008748	0.90[EUR][1000 genomes]
rs3008749	0.89[EUR][1000 genomes]
rs3008753	0.88[EUR][1000 genomes]
rs3118736	0.95[EUR][1000 genomes]
rs4442245	0.84[EUR][1000 genomes]
rs4475627	0.94[EUR][1000 genomes]
rs6474987	0.95[EUR][1000 genomes]
rs6474988	0.95[EUR][1000 genomes]
rs6474989	0.95[EUR][1000 genomes]
rs7023326	0.89[EUR][1000 genomes]
rs723756	0.93[EUR][1000 genomes]
rs9406568	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9406569	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9406581	0.92[EUR][1000 genomes]
rs9407697	0.82[EUR][1000 genomes]
rs9407702	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15987800-15989000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:15988600-15989000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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