Variant report
Variant | rs3008738 |
---|---|
Chromosome Location | chr9:15984097-15984098 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10733305 | 0.90[CHB][hapmap] |
rs10738417 | 0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs10738419 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs10738420 | 0.90[CHB][hapmap];0.95[JPT][hapmap] |
rs10756709 | 0.90[CHB][hapmap] |
rs10756710 | 0.90[CHB][hapmap] |
rs10756711 | 0.90[CHB][hapmap] |
rs10756714 | 0.81[CHB][hapmap];0.82[JPT][hapmap] |
rs10756715 | 0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs10756720 | 0.80[CHB][hapmap];0.86[JPT][hapmap] |
rs10756722 | 0.87[JPT][hapmap] |
rs10756724 | 0.82[JPT][hapmap] |
rs10756726 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs10756728 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs10756729 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs10810455 | 0.90[CHB][hapmap];0.81[JPT][hapmap] |
rs10810461 | 0.80[CHB][hapmap];0.86[JPT][hapmap] |
rs10810479 | 0.81[JPT][hapmap] |
rs10810483 | 0.87[JPT][hapmap] |
rs10810484 | 0.86[JPT][hapmap] |
rs10810485 | 0.86[JPT][hapmap] |
rs10810486 | 0.91[JPT][hapmap] |
rs10810487 | 0.91[JPT][hapmap] |
rs10810488 | 0.80[CHB][hapmap];0.91[JPT][hapmap] |
rs10810501 | 0.95[JPT][hapmap] |
rs10810502 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs10810506 | 0.95[JPT][hapmap] |
rs10810509 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs10962157 | 0.90[CHB][hapmap] |
rs10962158 | 0.90[CHB][hapmap] |
rs10962225 | 0.87[JPT][hapmap] |
rs10962227 | 0.91[JPT][hapmap] |
rs12379234 | 0.87[JPT][hapmap] |
rs1328265 | 0.85[ASN][1000 genomes] |
rs1328269 | 0.82[ASN][1000 genomes] |
rs1328283 | 0.86[JPT][hapmap] |
rs1328286 | 0.90[CHB][hapmap];0.90[JPT][hapmap] |
rs13296360 | 0.90[CHB][hapmap] |
rs1341732 | 0.84[JPT][hapmap] |
rs1341737 | 0.90[CHB][hapmap] |
rs1341738 | 0.90[CHB][hapmap] |
rs1359952 | 0.85[CHB][hapmap];0.90[JPT][hapmap] |
rs1410444 | 0.91[JPT][hapmap] |
rs1539172 | 0.90[CHB][hapmap] |
rs1539173 | 0.90[CHB][hapmap] |
rs1576171 | 0.86[ASN][1000 genomes] |
rs1927696 | 0.91[JPT][hapmap] |
rs1927698 | 0.87[JPT][hapmap] |
rs1927699 | 0.87[ASN][1000 genomes] |
rs1927700 | 0.87[ASN][1000 genomes] |
rs1927701 | 0.87[ASN][1000 genomes] |
rs1927702 | 0.87[ASN][1000 genomes] |
rs2017943 | 0.81[ASN][1000 genomes] |
rs2094522 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs2225181 | 0.91[JPT][hapmap] |
rs2225182 | 0.95[JPT][hapmap] |
rs2382540 | 0.90[CHB][hapmap] |
rs2382543 | 0.84[ASN][1000 genomes] |
rs2382544 | 0.84[ASN][1000 genomes] |
rs2382545 | 0.81[ASN][1000 genomes] |
rs2987008 | 0.83[ASN][1000 genomes] |
rs2987009 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs2987010 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs2987011 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs2987012 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs2987013 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs2987014 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs2987016 | 0.87[ASN][1000 genomes] |
rs2987017 | 0.87[ASN][1000 genomes] |
rs2987019 | 0.87[ASN][1000 genomes] |
rs2987020 | 0.87[ASN][1000 genomes] |
rs2987021 | 0.87[ASN][1000 genomes] |
rs2987022 | 0.87[ASN][1000 genomes] |
rs2987023 | 0.85[ASN][1000 genomes] |
rs2987024 | 0.87[ASN][1000 genomes] |
rs2987025 | 0.86[ASN][1000 genomes] |
rs2987039 | 0.82[ASN][1000 genomes] |
rs2987041 | 0.82[ASN][1000 genomes] |
rs2987042 | 0.82[ASN][1000 genomes] |
rs2987079 | 0.80[ASN][1000 genomes] |
rs2987081 | 0.82[ASN][1000 genomes] |
rs2987086 | 0.82[ASN][1000 genomes] |
rs2987096 | 0.80[ASN][1000 genomes] |
rs3008666 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs3008681 | 0.95[JPT][hapmap] |
rs3008719 | 0.82[ASN][1000 genomes] |
rs3008723 | 0.82[ASN][1000 genomes] |
rs3008726 | 0.82[ASN][1000 genomes] |
rs3008727 | 0.82[ASN][1000 genomes] |
rs3008728 | 0.82[ASN][1000 genomes] |
rs3008729 | 0.80[ASN][1000 genomes] |
rs3008730 | 0.82[ASN][1000 genomes] |
rs3008736 | 0.87[ASN][1000 genomes] |
rs3008739 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs3008742 | 0.85[ASN][1000 genomes] |
rs3008744 | 0.84[ASN][1000 genomes] |
rs3008745 | 0.85[ASN][1000 genomes] |
rs3008747 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs3008748 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs3008749 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs3008753 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
rs3118736 | 0.87[ASN][1000 genomes] |
rs4146293 | 0.90[CHB][hapmap] |
rs4472620 | 0.86[JPT][hapmap] |
rs4475627 | 0.81[ASN][1000 genomes] |
rs4582646 | 0.87[JPT][hapmap] |
rs4740628 | 0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs4741545 | 0.90[CHB][hapmap] |
rs4741546 | 0.90[CHB][hapmap] |
rs4741548 | 0.86[JPT][hapmap] |
rs4741552 | 0.86[CHB][hapmap];0.95[JPT][hapmap] |
rs4741553 | 0.95[JPT][hapmap] |
rs6474974 | 0.89[CHB][hapmap] |
rs6474987 | 0.85[ASN][1000 genomes] |
rs6474988 | 0.85[ASN][1000 genomes] |
rs6474989 | 0.86[ASN][1000 genomes] |
rs7023326 | 0.87[ASN][1000 genomes] |
rs7043770 | 0.90[CHB][hapmap] |
rs723756 | 0.82[ASN][1000 genomes] |
rs735962 | 0.91[JPT][hapmap] |
rs7849380 | 0.90[CHB][hapmap];0.81[JPT][hapmap] |
rs7860528 | 0.90[CHB][hapmap] |
rs7860755 | 0.90[CHB][hapmap] |
rs7873776 | 0.90[CHB][hapmap] |
rs9406581 | 0.82[ASN][1000 genomes] |
rs9407702 | 0.87[ASN][1000 genomes] |
rs955369 | 0.89[CHB][hapmap] |
rs961117 | 0.86[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv892625 | chr9:15326251-16064850 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
2 | nsv892637 | chr9:15926508-16060746 | Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv949463 | chr9:15970668-16377360 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv831521 | chr9:15974174-16106565 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | esv3409812 | chr9:15984092-15984207 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:15952600-15987600 | Weak transcription | Primary hematopoietic stem cells | blood |
2 | chr9:15973200-15988000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |