Variant report

Variant	rs9792412
Chromosome Location	chr9:16025889-16025890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10733306	0.82[EUR][1000 genomes]
rs10733307	0.82[EUR][1000 genomes]
rs10738419	0.84[CEU][hapmap]
rs10738420	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10738421	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10738422	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10738423	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10738424	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738425	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10738426	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10738427	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10738428	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10738430	0.82[EUR][1000 genomes]
rs10756722	0.81[CEU][hapmap]
rs10756724	0.87[CEU][hapmap]
rs10756726	0.84[CEU][hapmap]
rs10756728	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10756729	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10756730	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10756731	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10756733	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756734	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756735	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756736	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756737	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10756738	0.86[EUR][1000 genomes]
rs10756739	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756741	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10756742	0.82[EUR][1000 genomes]
rs10810479	0.81[CEU][hapmap]
rs10810483	0.81[CEU][hapmap]
rs10810484	0.81[CEU][hapmap]
rs10810485	0.85[CEU][hapmap]
rs10810486	0.81[CEU][hapmap]
rs10810488	0.81[CEU][hapmap]
rs10810494	0.81[CEU][hapmap]
rs10810501	0.85[CEU][hapmap]
rs10810502	0.84[CEU][hapmap]
rs10810506	0.85[CEU][hapmap]
rs10810509	0.84[CEU][hapmap]
rs10810514	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810517	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10810518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10810519	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810521	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810522	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810523	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810524	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810526	0.96[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10810527	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10810528	0.82[EUR][1000 genomes]
rs10962225	0.81[CEU][hapmap]
rs10962227	0.81[CEU][hapmap]
rs10962256	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10962260	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11788695	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12379234	0.80[CEU][hapmap]
rs12379466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1328273	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328274	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328275	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1328276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1328277	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1328278	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328279	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328280	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1328283	0.85[CEU][hapmap]
rs1328296	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1328298	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1359951	0.81[ASN][1000 genomes]
rs1359954	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1359956	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1359957	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1410444	0.85[CEU][hapmap]
rs1410450	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1410451	0.96[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1410452	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1410453	0.96[CEU][hapmap]
rs1410454	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1410455	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1887664	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1887666	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1887667	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1887668	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1887669	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1927698	0.81[CEU][hapmap]
rs2026661	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2149233	0.81[EUR][1000 genomes]
rs2382551	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2891003	0.84[AMR][1000 genomes]
rs3008707	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3824502	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4247294	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4472620	0.85[CEU][hapmap]
rs4582646	0.81[CEU][hapmap]
rs4740629	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4740631	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4740632	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4741548	0.81[CEU][hapmap]
rs4741553	0.85[CEU][hapmap]
rs4741557	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4741558	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4741559	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4741560	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4741561	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7040690	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs752489	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs752490	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs769151	0.81[CEU][hapmap]
rs7873925	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs943787	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs943788	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs943789	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs961117	0.85[CEU][hapmap]
rs9969791	0.85[CEU][hapmap]
rs997410	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16018200-16028600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:16022600-16031800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16023000-16026200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:16023600-16040600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:16024200-16026000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:16024200-16027000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:16024200-16028200	Weak transcription	NHLF	lung
8	chr9:16024200-16028600	Weak transcription	HMEC	breast
9	chr9:16024600-16027000	Weak transcription	NH-A	brain
10	chr9:16024800-16026000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:16024800-16026000	Weak transcription	Osteobl	bone
12	chr9:16024800-16026400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:16024800-16027000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:16024800-16027000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:16024800-16027800	Weak transcription	NHDF-Ad	bronchial
16	chr9:16025400-16026200	Enhancers	Adipose Nuclei	Adipose
17	chr9:16025800-16026200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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