Variant report

Variant	rs2794645
Chromosome Location	chr9:15893770-15893771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10283865	0.87[ASN][1000 genomes]
rs1169478	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1169479	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1169480	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1183919	0.95[ASN][1000 genomes]
rs1328288	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1359953	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1891211	0.84[ASN][1000 genomes]
rs1891212	0.84[ASN][1000 genomes]
rs1927696	0.81[EUR][1000 genomes]
rs1984246	0.84[ASN][1000 genomes]
rs2225181	0.80[EUR][1000 genomes]
rs2794634	0.99[AFR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794636	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2794646	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2794647	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2987071	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3008678	0.82[EUR][1000 genomes]
rs3008686	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7027202	0.88[ASN][1000 genomes]
rs735962	0.80[EUR][1000 genomes]
rs770191	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs770211	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs770213	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs770215	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs770219	0.82[AFR][1000 genomes]
rs7861456	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9650686	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15877000-15903400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:15892800-15897200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15893200-15897800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15893400-15897800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:15893400-15897800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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