Variant report

Variant	rs3008751
Chromosome Location	chr9:15967745-15967746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10733305	0.85[CHB][hapmap]
rs10756704	0.85[CHB][hapmap]
rs10756709	0.85[CHB][hapmap]
rs10756710	0.85[CHB][hapmap]
rs10756711	0.85[CHB][hapmap]
rs10756715	0.81[CHB][hapmap]
rs10810446	0.85[CHB][hapmap]
rs10810455	0.85[CHB][hapmap]
rs10962151	0.85[CHB][hapmap]
rs10962156	0.85[CHB][hapmap]
rs10962157	0.85[CHB][hapmap]
rs10962158	0.85[CHB][hapmap]
rs12378499	0.85[CHB][hapmap]
rs1328286	0.85[CHB][hapmap]
rs13296360	0.85[CHB][hapmap]
rs1341737	0.85[CHB][hapmap]
rs1341738	0.85[CHB][hapmap]
rs1539172	0.85[CHB][hapmap]
rs1539173	0.85[CHB][hapmap]
rs2185663	0.85[CHB][hapmap]
rs2382540	0.85[CHB][hapmap]
rs2987009	0.81[CHB][hapmap]
rs2987011	0.81[CHB][hapmap]
rs2987012	0.81[CHB][hapmap]
rs2987013	0.81[CHB][hapmap]
rs3008666	0.81[CHB][hapmap]
rs3008747	0.81[CHB][hapmap]
rs3008748	0.81[CHB][hapmap]
rs3008749	0.81[CHB][hapmap]
rs3008753	0.81[CHB][hapmap]
rs4146290	0.85[CHB][hapmap]
rs4146291	0.85[CHB][hapmap]
rs4146293	0.85[CHB][hapmap]
rs4741545	0.85[CHB][hapmap]
rs4741546	0.85[CHB][hapmap]
rs6474974	0.84[CHB][hapmap]
rs7043770	0.85[CHB][hapmap]
rs7849380	0.85[CHB][hapmap]
rs7860528	0.85[CHB][hapmap]
rs7860755	0.85[CHB][hapmap]
rs7873776	0.85[CHB][hapmap]
rs955369	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
3	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3008751	C9orf93	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15952600-15987600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15955800-15972600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15958400-15972200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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