Variant report

Variant	rs6474944
Chromosome Location	chr9:15670445-15670446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 274 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:259)

rs_ID	r²[population]
rs1009468	0.82[CHB][hapmap]
rs10118359	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10121393	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10121591	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10122339	0.90[ASN][1000 genomes]
rs10123042	0.92[ASN][1000 genomes]
rs1039813	0.87[EUR][1000 genomes]
rs1039814	0.87[EUR][1000 genomes]
rs10481557	1.00[CEU][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs10733295	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10733305	1.00[CEU][hapmap]
rs10738402	0.90[EUR][1000 genomes]
rs10738403	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10738404	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10738405	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10738406	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10756671	0.92[CEU][hapmap]
rs10756674	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10756676	0.87[EUR][1000 genomes]
rs10756677	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs10756678	0.88[EUR][1000 genomes]
rs10756679	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10756680	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10756686	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10756687	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756688	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756689	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756690	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10756692	0.88[EUR][1000 genomes]
rs10756693	0.88[EUR][1000 genomes]
rs10756694	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10756695	0.89[EUR][1000 genomes]
rs10756696	0.88[EUR][1000 genomes]
rs10756697	0.96[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs10756704	0.92[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs10810397	0.81[CEU][hapmap]
rs10810399	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10810400	0.85[EUR][1000 genomes]
rs10810401	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10810402	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10810405	0.86[EUR][1000 genomes]
rs10810407	0.83[EUR][1000 genomes]
rs10810408	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs10810409	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810410	0.83[EUR][1000 genomes]
rs10810416	0.89[CEU][hapmap];0.87[ASN][1000 genomes]
rs10810419	0.89[CEU][hapmap];0.87[ASN][1000 genomes]
rs10810422	0.92[ASN][1000 genomes]
rs10810424	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810426	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10810427	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810428	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10810429	0.89[CEU][hapmap];0.80[AMR][1000 genomes]
rs10810430	0.80[AMR][1000 genomes]
rs10810431	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810432	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810433	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10810434	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10810435	0.89[EUR][1000 genomes]
rs10810436	0.88[EUR][1000 genomes]
rs10810438	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs10810439	1.00[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs10810440	0.85[CEU][hapmap];0.94[CHB][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs10810442	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs10810455	1.00[CEU][hapmap]
rs10962066	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs10962070	1.00[CEU][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs10962072	0.83[EUR][1000 genomes]
rs10962073	0.82[EUR][1000 genomes]
rs10962098	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962099	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes]
rs10962106	0.87[ASN][1000 genomes]
rs10962110	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10962121	0.80[AMR][1000 genomes]
rs10962123	0.80[AMR][1000 genomes]
rs10962124	0.90[EUR][1000 genomes]
rs10962126	0.89[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs10962142	0.89[CEU][hapmap];0.87[MEX][hapmap]
rs10962147	0.82[CHB][hapmap]
rs10962149	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs10962151	0.92[CEU][hapmap]
rs10962152	0.82[CHB][hapmap]
rs10962153	0.82[CHB][hapmap]
rs10962157	0.92[CEU][hapmap]
rs10962158	0.92[CEU][hapmap]
rs10962170	0.82[CHB][hapmap]
rs11789538	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11789563	0.90[EUR][1000 genomes]
rs11791627	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792937	0.87[ASN][1000 genomes]
rs11793900	0.81[AMR][1000 genomes]
rs12004358	0.80[AMR][1000 genomes]
rs12340969	0.96[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12341679	0.85[CEU][hapmap];0.94[CHB][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs12352779	0.80[AMR][1000 genomes]
rs12377371	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs13291638	0.91[EUR][1000 genomes]
rs13301516	0.87[ASN][1000 genomes]
rs1341734	0.82[CHB][hapmap]
rs1355171	0.89[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1355173	0.82[CHB][hapmap]
rs1396706	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs1396707	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1396708	0.96[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs1509310	0.90[EUR][1000 genomes]
rs1533040	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1539171	0.82[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap]
rs1553728	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1572978	0.82[CHB][hapmap]
rs1592099	0.82[CEU][hapmap];0.87[MEX][hapmap]
rs169342	0.89[CEU][hapmap];0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs1812686	0.88[EUR][1000 genomes]
rs183928	0.89[CEU][hapmap];0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs1848582	0.87[ASN][1000 genomes]
rs192466	0.85[CEU][hapmap]
rs2055772	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2096121	0.82[CHB][hapmap]
rs2105315	0.82[CEU][hapmap]
rs2105317	0.92[CEU][hapmap]
rs2136355	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2153725	0.82[CHB][hapmap]
rs2153726	0.82[CHB][hapmap]
rs2153727	0.82[CHB][hapmap]
rs2175080	0.89[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.82[TSI][hapmap]
rs2175082	0.92[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2185665	0.82[CHB][hapmap]
rs2382532	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2382534	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2382538	0.90[EUR][1000 genomes]
rs2382553	0.82[CHB][hapmap]
rs276432	0.82[ASN][1000 genomes]
rs276433	0.82[ASN][1000 genomes]
rs276435	0.89[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs276436	0.89[CEU][hapmap];0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs276448	0.89[CEU][hapmap]
rs276449	0.89[CEU][hapmap]
rs276453	0.89[CEU][hapmap]
rs276455	0.89[CEU][hapmap]
rs2821545	0.81[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs28403566	0.84[ASN][1000 genomes]
rs2891007	0.82[CHB][hapmap]
rs3119699	0.88[CEU][hapmap]
rs3122702	0.80[ASN][1000 genomes]
rs35057009	0.80[AMR][1000 genomes]
rs35146544	0.85[EUR][1000 genomes]
rs3955162	0.85[EUR][1000 genomes]
rs4146290	0.92[CEU][hapmap]
rs4146291	0.92[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs4281189	0.82[EUR][1000 genomes]
rs432452	0.89[CEU][hapmap]
rs433849	0.84[CEU][hapmap]
rs4339736	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs442549	0.89[CEU][hapmap]
rs4448380	0.87[EUR][1000 genomes]
rs451878	0.89[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.84[ASN][1000 genomes]
rs4740614	0.85[CEU][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs4740615	1.00[CEU][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs4740618	0.87[EUR][1000 genomes]
rs4740619	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4740620	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4740621	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4740622	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4740624	1.00[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs4741510	0.85[CEU][hapmap];0.91[TSI][hapmap]
rs4741515	0.87[EUR][1000 genomes]
rs4741517	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4741519	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4741520	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4741527	0.81[EUR][1000 genomes]
rs4741528	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4741529	0.94[EUR][1000 genomes]
rs4741534	0.82[ASW][hapmap];0.96[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4741535	0.96[CEU][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs4741545	0.82[MEX][hapmap]
rs59883669	0.81[ASN][1000 genomes]
rs62573118	0.80[AMR][1000 genomes]
rs6474931	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6474942	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6474946	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6474951	0.85[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes]
rs6474952	0.89[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.82[TSI][hapmap]
rs6474953	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6474954	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6474955	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6474966	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs6474974	0.92[CEU][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs7019205	0.82[CHB][hapmap]
rs7019430	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7019851	0.82[CHB][hapmap];0.81[TSI][hapmap]
rs7023275	0.89[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs7024640	0.88[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7025669	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7030846	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7031365	0.87[ASN][1000 genomes]
rs7032457	0.82[CHB][hapmap]
rs7032634	0.82[CHB][hapmap]
rs7032755	0.94[ASW][hapmap];0.92[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7032877	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7033236	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7034484	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7034781	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs7035863	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7036172	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036674	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036875	0.92[ASN][1000 genomes]
rs7042475	0.87[ASN][1000 genomes]
rs7044122	0.87[EUR][1000 genomes]
rs7045018	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs7046351	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7047045	0.82[CHB][hapmap]
rs7049101	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7049176	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7389047	0.89[EUR][1000 genomes]
rs7389629	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7467156	0.85[CEU][hapmap];0.94[CHB][hapmap]
rs7467207	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[GIH][hapmap];0.80[TSI][hapmap]
rs770191	0.82[CHB][hapmap]
rs770524	0.88[CEU][hapmap]
rs7847144	0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7848511	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851056	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7853744	0.82[CHB][hapmap]
rs7854714	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7855235	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7859780	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7860528	0.82[CEU][hapmap]
rs7860623	0.86[EUR][1000 genomes]
rs7860755	0.92[CEU][hapmap]
rs7860869	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs7861004	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7863088	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7866641	0.82[CHB][hapmap]
rs7868779	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7869624	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs7872912	0.82[CHB][hapmap]
rs7873152	0.89[CEU][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap]
rs7873776	0.92[CEU][hapmap]
rs7874533	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs7875367	0.89[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9298738	0.82[CHB][hapmap]
rs9298740	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs9298741	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs9406537	0.82[CHB][hapmap]
rs9406542	0.81[CHB][hapmap]
rs9407648	0.82[CHB][hapmap]
rs9407649	0.82[CHB][hapmap]
rs9407650	0.82[CHB][hapmap]
rs9407651	0.82[CHB][hapmap]
rs9407652	0.82[CHB][hapmap]
rs9407654	0.82[CHB][hapmap]
rs9407657	0.82[CHB][hapmap]
rs9407661	0.82[CHB][hapmap]
rs9407662	0.82[CHB][hapmap]
rs950234	0.85[CEU][hapmap]
rs954663	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs955369	0.92[CEU][hapmap]
rs9696751	0.87[EUR][1000 genomes]
rs9886779	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6474944	RNF19B	trans	brain	seeQTL
rs6474944	C9orf93	cis	parietal	SCAN
rs6474944	C9orf93	cis	brain	seeQTL
rs6474944	C9orf93	cis	cerebellum	SCAN
rs6474944	INPP4B	trans	brain	seeQTL
rs6474944	GATAD2A	trans	brain	seeQTL
rs6474944	HTR2C	trans	brain	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15645600-15689200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15655200-15691600	Weak transcription	Thymus	Thymus
3	chr9:15666800-15671600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15667000-15670800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:15667200-15670800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:15669000-15720800	Weak transcription	Gastric	stomach
7	chr9:15669200-15676400	Weak transcription	Pancreas	Pancrea
8	chr9:15670000-15671200	Enhancers	GM12878-XiMat	blood

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