Variant report

Variant	rs3008685
Chromosome Location	chr9:15917734-15917735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10962193	0.80[ASN][1000 genomes]
rs10962194	0.80[ASN][1000 genomes]
rs1169470	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1169474	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1169475	0.80[EUR][1000 genomes]
rs1169476	0.81[EUR][1000 genomes]
rs1169477	0.85[EUR][1000 genomes]
rs1169478	0.81[AFR][1000 genomes]
rs1169481	0.80[EUR][1000 genomes]
rs1169482	0.82[EUR][1000 genomes]
rs1177610	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1177611	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1184912	0.84[ASN][1000 genomes]
rs1184913	0.80[EUR][1000 genomes]
rs1185652	0.95[ASN][1000 genomes]
rs1186048	0.80[EUR][1000 genomes]
rs1186387	0.85[EUR][1000 genomes]
rs11999303	0.80[ASN][1000 genomes]
rs12005062	0.80[ASN][1000 genomes]
rs12005485	0.80[ASN][1000 genomes]
rs12005521	0.80[ASN][1000 genomes]
rs12685963	0.80[ASN][1000 genomes]
rs1328281	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1328287	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1341733	0.85[EUR][1000 genomes]
rs1536686	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536687	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16933805	0.82[ASN][1000 genomes]
rs1752777	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1773062	0.80[EUR][1000 genomes]
rs1815697	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1891209	0.85[EUR][1000 genomes]
rs1935220	0.93[ASN][1000 genomes]
rs1935221	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1935223	0.86[EUR][1000 genomes]
rs2094519	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2094520	0.85[EUR][1000 genomes]
rs2105313	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2105314	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2149230	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182934	0.85[EUR][1000 genomes]
rs2182935	0.87[EUR][1000 genomes]
rs2769716	0.80[EUR][1000 genomes]
rs2794624	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794625	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2794626	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794627	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794628	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794629	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2794631	0.85[EUR][1000 genomes]
rs2794632	0.93[ASN][1000 genomes]
rs2794633	0.93[ASN][1000 genomes]
rs2794634	0.81[AFR][1000 genomes]
rs2794638	0.85[EUR][1000 genomes]
rs2987045	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2987046	0.84[EUR][1000 genomes]
rs2987053	0.85[EUR][1000 genomes]
rs2987054	0.86[EUR][1000 genomes]
rs2987057	0.87[EUR][1000 genomes]
rs2987058	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2987060	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987061	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2987062	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987064	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2987065	0.86[EUR][1000 genomes]
rs2987066	0.91[EUR][1000 genomes]
rs2995024	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2995025	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3008680	0.91[EUR][1000 genomes]
rs3008682	0.84[EUR][1000 genomes]
rs3008683	0.87[EUR][1000 genomes]
rs3008684	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3008686	0.82[AFR][1000 genomes]
rs3008691	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008692	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008693	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008695	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008698	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3008700	0.83[EUR][1000 genomes]
rs3118737	0.82[AMR][1000 genomes]
rs59923163	0.82[ASN][1000 genomes]
rs7026090	0.80[ASN][1000 genomes]
rs7029375	0.80[ASN][1000 genomes]
rs7029410	0.80[ASN][1000 genomes]
rs7040071	0.80[ASN][1000 genomes]
rs7040549	0.80[ASN][1000 genomes]
rs7040580	0.80[ASN][1000 genomes]
rs770192	0.81[EUR][1000 genomes]
rs770194	0.81[EUR][1000 genomes]
rs770198	0.82[EUR][1000 genomes]
rs770199	0.82[EUR][1000 genomes]
rs770200	0.83[EUR][1000 genomes]
rs770201	0.84[EUR][1000 genomes]
rs770202	0.84[EUR][1000 genomes]
rs770203	0.82[EUR][1000 genomes]
rs770204	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs770205	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs770207	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs770219	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7860856	0.86[EUR][1000 genomes]
rs7861105	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs809493	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9407668	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753625	chr9:15914055-15980320	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15915800-15920800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15916000-15920600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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