Variant report

Variant	rs2987091
Chromosome Location	chr9:16059807-16059808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2987093	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16045800-16061000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:16048600-16071400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:16049600-16063800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:16053400-16060200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:16058000-16060200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:16058400-16060200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:16058400-16060200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:16058600-16060200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:16058600-16060200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:16058600-16060400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:16058600-16060800	Weak transcription	A549	lung
12	chr9:16058600-16062400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:16058600-16062800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:16058600-16063000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:16058600-16065200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:16058600-16069400	Weak transcription	Fetal Lung	lung
17	chr9:16058600-16069600	Weak transcription	NHLF	lung
18	chr9:16058800-16060000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:16058800-16060200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:16058800-16060200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:16058800-16060400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:16058800-16061400	Enhancers	Primary T cells from cord blood	blood
23	chr9:16058800-16062200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:16058800-16062800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:16058800-16066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:16059000-16060200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:16059000-16060800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:16059200-16060200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:16059200-16060200	Weak transcription	Fetal Thymus	thymus
30	chr9:16059200-16060200	Weak transcription	GM12878-XiMat	blood
31	chr9:16059200-16060400	Weak transcription	NHEK	skin
32	chr9:16059200-16060800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:16059200-16060800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:16059200-16060800	Weak transcription	HMEC	breast
35	chr9:16059200-16062200	Weak transcription	NH-A	brain
36	chr9:16059200-16062600	Weak transcription	Muscle Satellite Cultured Cells	--

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