The 2.0 version of rSNPBase

Variant report

Variant rs2993539
Chromosome Location chr1:212143058-212143059
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212106200-212148600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:212106400-212147800 Weak transcription NH-A brain
3 chr1:212112000-212170200 Weak transcription Small Intestine intestine
4 chr1:212112400-212148600 Weak transcription NHDF-Ad bronchial
5 chr1:212112600-212148200 Weak transcription Colon Smooth Muscle Colon
6 chr1:212112800-212202000 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr1:212113600-212151600 Weak transcription Psoas Muscle Psoas
8 chr1:212113600-212170200 Weak transcription Fetal Brain Male brain
9 chr1:212114200-212185800 Weak transcription Brain Angular Gyrus brain
10 chr1:212115800-212144000 Weak transcription Adipose Nuclei Adipose
11 chr1:212115800-212151600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:212118600-212149000 Weak transcription Fetal Heart heart
13 chr1:212123400-212152600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr1:212123600-212159200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr1:212123800-212198200 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr1:212125400-212149000 Weak transcription Aorta Aorta
17 chr1:212125400-212170400 Weak transcription Brain Anterior Caudate brain
18 chr1:212125600-212159200 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:212125600-212160000 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr1:212125800-212148200 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr1:212126000-212157000 Weak transcription HUVEC blood vessel
22 chr1:212126600-212148800 Weak transcription NHEK skin
23 chr1:212129000-212167800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:212129400-212204000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:212130000-212157600 Strong transcription Primary hematopoietic stem cells short term culture blood
26 chr1:212133200-212148200 Weak transcription Rectal Smooth Muscle rectum
27 chr1:212133200-212152600 Weak transcription H9 Cell Line embryonic stem cell
28 chr1:212133200-212170600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:212133400-212147800 Weak transcription iPS-18 Cell Line embryonic stem cell
30 chr1:212133400-212152600 Weak transcription NHLF lung
31 chr1:212133400-212157000 Weak transcription Esophagus oesophagus
32 chr1:212133400-212159400 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:212133400-212188200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr1:212133600-212149000 Weak transcription H1 Cell Line embryonic stem cell
35 chr1:212133600-212151000 Weak transcription Placenta Placenta
36 chr1:212133600-212151000 Weak transcription Right Ventricle heart
37 chr1:212133600-212151600 Weak transcription Lung lung
38 chr1:212133600-212158400 Weak transcription Brain Inferior Temporal Lobe brain
39 chr1:212133600-212159000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:212133600-212159000 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr1:212133600-212159000 Weak transcription Skeletal Muscle Female skeletal muscle
42 chr1:212133600-212159800 Weak transcription Brain Substantia Nigra brain
43 chr1:212133600-212170000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:212133600-212170200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:212133600-212174400 Weak transcription Spleen Spleen
46 chr1:212133800-212146000 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr1:212133800-212158400 Weak transcription Fetal Intestine Small intestine
48 chr1:212133800-212159200 Weak transcription Thymus Thymus
49 chr1:212133800-212160000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:212133800-212170000 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015