The 2.0 version of rSNPBase

Variant report

Variant rs3009997
Chromosome Location chr1:212167000-212167001
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:212112000-212170200 Weak transcription Small Intestine intestine
2 chr1:212112800-212202000 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:212113600-212170200 Weak transcription Fetal Brain Male brain
4 chr1:212114200-212185800 Weak transcription Brain Angular Gyrus brain
5 chr1:212123800-212198200 Weak transcription Primary T killer memory cells from peripheral blood blood
6 chr1:212125400-212170400 Weak transcription Brain Anterior Caudate brain
7 chr1:212129000-212167800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:212129400-212204000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr1:212133200-212170600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:212133400-212188200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:212133600-212170000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:212133600-212170200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:212133600-212174400 Weak transcription Spleen Spleen
14 chr1:212133800-212170000 Weak transcription Pancreas Pancrea
15 chr1:212133800-212208000 Weak transcription Gastric stomach
16 chr1:212134000-212207600 Weak transcription Primary T helper naive cells fromperipheralblood blood
17 chr1:212134000-212207800 Weak transcription Colonic Mucosa Colon
18 chr1:212136600-212204000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr1:212146000-212185600 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr1:212148800-212207600 Weak transcription Rectal Smooth Muscle rectum
21 chr1:212149200-212180600 Weak transcription HSMMtube muscle
22 chr1:212149200-212199800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:212149800-212172400 Weak transcription Fetal Heart heart
24 chr1:212151800-212187000 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr1:212152800-212201600 Weak transcription Placenta Amnion Placenta Amnion
26 chr1:212153400-212203600 Weak transcription Psoas Muscle Psoas
27 chr1:212153600-212202600 Weak transcription H9 Cell Line embryonic stem cell
28 chr1:212154000-212170000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:212154200-212170000 Weak transcription Stomach Smooth Muscle stomach
30 chr1:212155600-212170000 Weak transcription Fetal Kidney kidney
31 chr1:212157000-212180000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:212157600-212183000 Weak transcription HUVEC blood vessel
33 chr1:212159400-212170000 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr1:212159600-212169600 Weak transcription Lung lung
35 chr1:212159600-212170400 Weak transcription HMEC breast
36 chr1:212159600-212178200 Weak transcription H1 Cell Line embryonic stem cell
37 chr1:212159800-212170400 Weak transcription A549 lung
38 chr1:212160000-212189400 Weak transcription NHDF-Ad bronchial
39 chr1:212160200-212169600 Weak transcription Ovary ovary
40 chr1:212160200-212170000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr1:212160200-212170400 Weak transcription Left Ventricle heart
42 chr1:212160200-212170600 Weak transcription Aorta Aorta
43 chr1:212160200-212178200 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr1:212160200-212182200 Weak transcription NHEK skin
45 chr1:212160200-212182800 Weak transcription Brain Inferior Temporal Lobe brain
46 chr1:212160200-212199800 Weak transcription Brain Substantia Nigra brain
47 chr1:212160200-212202600 Weak transcription Muscle Satellite Cultured Cells --
48 chr1:212160400-212170000 Weak transcription Primary T cells from cord blood blood
49 chr1:212160400-212170000 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr1:212160400-212170000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015