Variant report

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2915416	0.84[ASN][1000 genomes]
rs7858697	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428542	chr9:103709079-103878127	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831669	chr9:103709125-103878122	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103874600-103878000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:103874800-103878000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:103875800-103878200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr9:103876000-103877600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:103876200-103877600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr9:103876200-103877800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:103876200-103878400	Enhancers	Brain Hippocampus Middle	brain
8	chr9:103876400-103877600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr9:103876400-103877600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:103876400-103879600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:103876600-103877600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:103876600-103877800	Enhancers	HUVEC	blood vessel
13	chr9:103876600-103878000	Enhancers	Fetal Brain Female	brain
14	chr9:103876600-103878200	Enhancers	Brain Anterior Caudate	brain
15	chr9:103876800-103877600	Enhancers	Fetal Brain Male	brain
16	chr9:103877000-103877800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:103877000-103877800	Enhancers	Brain Substantia Nigra	brain
18	chr9:103877200-103877600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr9:103877200-103877600	Enhancers	Brain Angular Gyrus	brain
20	chr9:103877400-103877600	Active TSS	Brain Cingulate Gyrus	brain
21	chr9:103877400-103877800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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