Variant report

Variant	rs7858697
Chromosome Location	chr9:103883398-103883399
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10989411	1.00[JPT][hapmap]
rs1864662	1.00[JPT][hapmap]
rs2567309	1.00[JPT][hapmap]
rs2567310	1.00[JPT][hapmap]
rs2771060	0.81[AMR][1000 genomes]
rs2771061	1.00[JPT][hapmap]
rs2771064	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2771074	1.00[JPT][hapmap]
rs2915415	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2915416	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2915422	1.00[JPT][hapmap]
rs2915423	1.00[JPT][hapmap]
rs2915424	1.00[JPT][hapmap]
rs2987738	1.00[JPT][hapmap]
rs2993810	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs446911	1.00[JPT][hapmap]
rs453477	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103877600-103901600	Weak transcription	Fetal Brain Male	brain
2	chr9:103877800-103887600	Weak transcription	Brain Substantia Nigra	brain
3	chr9:103878000-103883400	Weak transcription	Fetal Brain Female	brain
4	chr9:103880000-103884200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:103880800-103884000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr9:103881800-103884000	Weak transcription	HUVEC	blood vessel
7	chr9:103882000-103887800	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:103882200-103884000	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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