Variant report

Variant	rs2567310
Chromosome Location	chr9:103964075-103964076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10989411	1.00[JPT][hapmap]
rs1864662	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs2567309	0.90[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs2771060	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2771061	1.00[JPT][hapmap]
rs2771064	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs2771074	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2915415	0.88[EUR][1000 genomes]
rs2915416	1.00[JPT][hapmap]
rs2915422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2915423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2915424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2987736	0.82[EUR][1000 genomes]
rs2987738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446911	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs453477	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7858697	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948791	chr9:103893030-103964650	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103955800-103964400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:103963400-103965600	Enhancers	Fetal Heart	heart
3	chr9:103963600-103964600	Enhancers	HepG2	liver
4	chr9:103963600-103964800	Enhancers	Brain Anterior Caudate	brain
5	chr9:103963800-103964200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:103963800-103964800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:103963800-103965800	Enhancers	Brain Hippocampus Middle	brain
8	chr9:103964000-103964200	Enhancers	Liver	Liver
9	chr9:103964000-103964400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr9:103964000-103964600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:103964000-103965200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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