Variant report

Variant	rs10989411
Chromosome Location	chr9:103889445-103889446
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1864662	1.00[JPT][hapmap]
rs2567309	1.00[JPT][hapmap]
rs2567310	1.00[JPT][hapmap]
rs2771061	1.00[JPT][hapmap]
rs2771064	1.00[JPT][hapmap]
rs2771074	1.00[JPT][hapmap]
rs2915416	1.00[JPT][hapmap]
rs2915422	1.00[JPT][hapmap]
rs2915423	1.00[JPT][hapmap]
rs2915424	1.00[JPT][hapmap]
rs2987738	1.00[JPT][hapmap]
rs446911	1.00[JPT][hapmap]
rs7858697	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv982331	chr9:103885456-103890947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103877600-103901600	Weak transcription	Fetal Brain Male	brain
2	chr9:103888400-103890000	Weak transcription	HepG2	liver
3	chr9:103888600-103891000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:103889400-103889800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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