Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11840671	0.86[ASN][1000 genomes]
rs12429379	0.86[ASN][1000 genomes]
rs17060094	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1986650	0.86[ASN][1000 genomes]
rs2329307	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2329313	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2487341	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2497619	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2497626	1.00[ASN][1000 genomes]
rs2497627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2497628	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34306243	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35285735	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35914685	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59376689	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67838817	0.86[EUR][1000 genomes]
rs73214016	0.83[EUR][1000 genomes]
rs7332443	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7338918	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528356	0.80[ASN][1000 genomes]
rs9528362	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053698	chr13:62108064-62271909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62237600-62240800	Enhancers	Fetal Intestine Large	intestine
2	chr13:62237800-62240200	Enhancers	Fetal Intestine Small	intestine
3	chr13:62238000-62238800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:62238400-62238600	Enhancers	Duodenum Mucosa	Duodenum
5	chr13:62238400-62239600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:62238400-62239600	Flanking Active TSS	HepG2	liver
7	chr13:62238400-62239800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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