Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11840671	0.86[ASN][1000 genomes]
rs12429379	0.86[ASN][1000 genomes]
rs17060094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1986650	0.86[ASN][1000 genomes]
rs2329307	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2329313	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2487341	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2497619	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2497626	1.00[ASN][1000 genomes]
rs2497627	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2497628	0.87[AMR][1000 genomes]
rs3002261	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34306243	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35285735	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35914685	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59376689	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67838817	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73214016	0.86[EUR][1000 genomes]
rs7332443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9528356	0.80[ASN][1000 genomes]
rs9528362	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1053698	chr13:62108064-62271909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900249	chr13:62133250-62218811	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900250	chr13:62147535-62321073	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv528090	chr13:62175238-62190998	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62182000-62183000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:62182000-62183000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:62182200-62182800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:62182200-62183000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr13:62182200-62183000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:62182400-62183000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:62182600-62183000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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