Variant report

Variant	rs3006855
Chromosome Location	chr6:55057679-55057680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3006851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3006853	1.00[YRI][hapmap]
rs3006856	1.00[AMR][1000 genomes]
rs3122147	1.00[YRI][hapmap]
rs3134688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3134695	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3134697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3134702	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3134709	1.00[AMR][1000 genomes]
rs7450811	1.00[YRI][hapmap]
rs9475139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55054200-55062000	Weak transcription	Stomach Mucosa	stomach
2	chr6:55057200-55058400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:55057400-55057800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:55057400-55057800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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