Variant report

Variant	rs3008731
Chromosome Location	chr9:16003441-16003442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10738420	0.85[CEU][hapmap]
rs10756724	0.80[CEU][hapmap]
rs10756728	0.81[CEU][hapmap];0.84[MEX][hapmap]
rs10756729	0.81[CEU][hapmap];0.84[MEX][hapmap]
rs10962252	0.83[ASN][1000 genomes]
rs13298860	0.82[ASN][1000 genomes]
rs13298936	0.81[ASN][1000 genomes]
rs17353213	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3008731	ADAMTSL1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15999000-16003600	Enhancers	HMEC	breast
2	chr9:15999800-16003600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:15999800-16003600	Enhancers	Osteobl	bone
4	chr9:15999800-16003800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16000200-16003600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:16000200-16010400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:16000600-16003800	Weak transcription	HSMM	muscle
8	chr9:16001600-16011800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:16002400-16012800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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