Variant report

Variant	rs3010288
Chromosome Location	chr6:139807350-139807351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11155070	0.91[ASN][1000 genomes]
rs1468708	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1468709	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2908513	0.84[JPT][hapmap]
rs3010286	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896461	0.91[ASN][1000 genomes]
rs4896463	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6570344	0.87[ASN][1000 genomes]
rs6907607	0.81[ASN][1000 genomes]
rs6916887	0.91[ASN][1000 genomes]
rs6923416	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6926031	0.91[ASN][1000 genomes]
rs9376420	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9399282	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9403080	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9403084	0.88[JPT][hapmap]
rs9495502	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139802400-139807400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:139803800-139807400	Weak transcription	Ovary	ovary
3	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:139804600-139810800	Weak transcription	K562	blood
5	chr6:139805200-139807400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:139806400-139807800	Enhancers	HepG2	liver
7	chr6:139806600-139807600	Enhancers	Colon Smooth Muscle	Colon
8	chr6:139806600-139807600	Enhancers	Fetal Heart	heart
9	chr6:139806600-139807600	Enhancers	Rectal Smooth Muscle	rectum
10	chr6:139806600-139807800	Enhancers	Fetal Stomach	stomach
11	chr6:139807000-139807800	Enhancers	Fetal Kidney	kidney
12	chr6:139807000-139811200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:139807200-139807600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:139807200-139807800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:139807200-139807800	Enhancers	Stomach Smooth Muscle	stomach
16	chr6:139807200-139808000	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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