Variant report
| Variant | rs3013661 |
|---|---|
| Chromosome Location | chr13:85358803-85358804 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10467662 | 0.99[ASN][1000 genomes] |
| rs1526005 | 0.84[ASN][1000 genomes] |
| rs1526022 | 0.81[ASN][1000 genomes] |
| rs1547574 | 0.81[ASN][1000 genomes] |
| rs1608937 | 0.99[ASN][1000 genomes] |
| rs1608938 | 0.99[ASN][1000 genomes] |
| rs1917896 | 0.98[ASN][1000 genomes] |
| rs2140941 | 0.99[ASN][1000 genomes] |
| rs2692957 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2692958 | 0.99[ASN][1000 genomes] |
| rs2692959 | 0.99[ASN][1000 genomes] |
| rs2692962 | 0.99[ASN][1000 genomes] |
| rs2692963 | 0.99[ASN][1000 genomes] |
| rs2692964 | 0.99[ASN][1000 genomes] |
| rs2692965 | 0.99[ASN][1000 genomes] |
| rs2692966 | 0.99[ASN][1000 genomes] |
| rs2692967 | 0.99[ASN][1000 genomes] |
| rs2692970 | 0.99[ASN][1000 genomes] |
| rs2809088 | 0.99[ASN][1000 genomes] |
| rs2809094 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2809095 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2949887 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2949888 | 0.99[ASN][1000 genomes] |
| rs2949889 | 0.99[ASN][1000 genomes] |
| rs3013654 | 0.81[ASN][1000 genomes] |
| rs3013655 | 0.84[ASN][1000 genomes] |
| rs3013660 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3013662 | 0.99[ASN][1000 genomes] |
| rs4288893 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9546872 | 0.99[ASN][1000 genomes] |
| rs9602555 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv900698 | chr13:85276978-85374146 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv900699 | chr13:85276978-85400978 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv900700 | chr13:85276978-85429910 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv900701 | chr13:85276978-85429910 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv900702 | chr13:85276978-85605946 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv900703 | chr13:85337948-85582307 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:85358800-85366400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
