Variant report

Variant	rs2809095
Chromosome Location	chr13:85374146-85374147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10467662	0.99[ASN][1000 genomes]
rs1526005	0.84[ASN][1000 genomes]
rs1526022	0.81[ASN][1000 genomes]
rs1543995	0.90[AFR][1000 genomes]
rs1547574	0.81[ASN][1000 genomes]
rs1608937	0.99[ASN][1000 genomes]
rs1608938	0.99[ASN][1000 genomes]
rs1917896	0.98[ASN][1000 genomes]
rs2140941	0.99[ASN][1000 genomes]
rs2692957	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2692958	0.99[ASN][1000 genomes]
rs2692959	0.99[ASN][1000 genomes]
rs2692962	0.99[ASN][1000 genomes]
rs2692963	0.99[ASN][1000 genomes]
rs2692964	0.99[ASN][1000 genomes]
rs2692965	0.99[ASN][1000 genomes]
rs2692966	0.99[ASN][1000 genomes]
rs2692967	0.99[ASN][1000 genomes]
rs2692970	0.99[ASN][1000 genomes]
rs2809087	0.96[AFR][1000 genomes]
rs2809088	0.99[ASN][1000 genomes]
rs2809094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2949887	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2949888	0.99[ASN][1000 genomes]
rs2949889	0.99[ASN][1000 genomes]
rs3013654	0.81[ASN][1000 genomes]
rs3013655	0.84[ASN][1000 genomes]
rs3013660	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3013661	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3013662	0.99[ASN][1000 genomes]
rs4288893	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4578543	0.96[AFR][1000 genomes]
rs5009567	0.84[EUR][1000 genomes]
rs7988425	0.96[AFR][1000 genomes]
rs9546872	0.99[ASN][1000 genomes]
rs9602555	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900698	chr13:85276978-85374146	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv900699	chr13:85276978-85400978	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900700	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900701	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85370000-85378600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:85371400-85375200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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