Variant report
| Variant | rs4578543 |
|---|---|
| Chromosome Location | chr13:85363360-85363361 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10871194 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11149324 | 0.82[EUR][1000 genomes] |
| rs11149325 | 0.82[EUR][1000 genomes] |
| rs11149326 | 0.82[EUR][1000 genomes] |
| rs11149327 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11149328 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11149329 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11149330 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11149331 | 0.83[AMR][1000 genomes] |
| rs12018439 | 0.82[EUR][1000 genomes] |
| rs12561335 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1405082 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1543995 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2692957 | 0.98[AFR][1000 genomes] |
| rs2692961 | 0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2809086 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2809087 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2809094 | 0.98[AFR][1000 genomes] |
| rs2809095 | 0.96[AFR][1000 genomes] |
| rs2949887 | 0.98[AFR][1000 genomes] |
| rs2949890 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2949896 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3013656 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7988425 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv900698 | chr13:85276978-85374146 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv900699 | chr13:85276978-85400978 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv900700 | chr13:85276978-85429910 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv900701 | chr13:85276978-85429910 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv900702 | chr13:85276978-85605946 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv900703 | chr13:85337948-85582307 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:85358800-85366400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr13:85362400-85366000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
