Variant report

Variant	rs10871194
Chromosome Location	chr13:85385592-85385593
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10747195	0.87[ASN][1000 genomes]
rs10781935	0.99[ASN][1000 genomes]
rs10871197	0.87[ASN][1000 genomes]
rs11149324	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149325	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149326	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149327	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149328	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149329	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149330	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149331	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11149341	0.87[ASN][1000 genomes]
rs11149344	0.87[ASN][1000 genomes]
rs12018439	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12561335	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1405082	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534181	0.99[ASN][1000 genomes]
rs1543995	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2692961	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2809086	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2809087	0.86[AMR][1000 genomes]
rs2949890	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3013656	0.87[AMR][1000 genomes]
rs4578543	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72630968	0.80[ASN][1000 genomes]
rs7988425	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9670062	0.87[ASN][1000 genomes]
rs9670712	0.87[ASN][1000 genomes]
rs9670714	0.87[ASN][1000 genomes]
rs9670717	0.87[ASN][1000 genomes]
rs9670722	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900699	chr13:85276978-85400978	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv900700	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900701	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv983729	chr13:85379122-85428478	Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85385400-85386200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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