Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10747195	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10781935	0.86[ASN][1000 genomes]
rs10781941	0.94[AFR][1000 genomes]
rs10871194	0.87[ASN][1000 genomes]
rs10871197	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10871207	0.97[AFR][1000 genomes]
rs11149324	0.89[ASN][1000 genomes]
rs11149325	0.89[ASN][1000 genomes]
rs11149326	0.89[ASN][1000 genomes]
rs11149327	0.89[ASN][1000 genomes]
rs11149328	0.89[ASN][1000 genomes]
rs11149329	0.89[ASN][1000 genomes]
rs11149330	0.89[ASN][1000 genomes]
rs11149331	0.89[ASN][1000 genomes]
rs11149341	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11149344	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12018439	0.89[ASN][1000 genomes]
rs12561335	0.89[ASN][1000 genomes]
rs1405082	0.87[ASN][1000 genomes]
rs1534181	0.86[ASN][1000 genomes]
rs2091336	0.98[AFR][1000 genomes]
rs2368313	0.97[AFR][1000 genomes]
rs4910992	0.98[AFR][1000 genomes]
rs72630968	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9670062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9670712	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9670717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9670722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832667	chr13:85422787-85557377	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85438600-85439400	Enhancers	Hela-S3	cervix

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