Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10747195	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10871194	0.80[ASN][1000 genomes]
rs10871197	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11149324	0.83[ASN][1000 genomes]
rs11149325	0.83[ASN][1000 genomes]
rs11149326	0.83[ASN][1000 genomes]
rs11149327	0.83[ASN][1000 genomes]
rs11149328	0.83[ASN][1000 genomes]
rs11149329	0.83[ASN][1000 genomes]
rs11149330	0.83[ASN][1000 genomes]
rs11149331	0.83[ASN][1000 genomes]
rs11149341	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11149344	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12018439	0.82[ASN][1000 genomes]
rs12561335	0.83[ASN][1000 genomes]
rs1405082	0.80[ASN][1000 genomes]
rs9670062	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9670712	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9670714	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9670717	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9670722	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832667	chr13:85422787-85557377	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85440200-85442000	Enhancers	Hela-S3	cervix
2	chr13:85440400-85444200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:85440400-85444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:85440600-85442600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:85441000-85441800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:85441000-85442000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:85441200-85441800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:85441200-85442000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:85441200-85442200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:85441200-85442200	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search: