Variant report

Variant	rs3015124
Chromosome Location	chr1:79820666-79820667
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10732727	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10735756	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10735757	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11162684	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11162685	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11162695	0.91[ASN][1000 genomes]
rs11162696	0.91[ASN][1000 genomes]
rs11162697	0.91[ASN][1000 genomes]
rs12127263	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12726250	0.82[ASN][1000 genomes]
rs12732505	0.91[ASN][1000 genomes]
rs12734357	0.91[ASN][1000 genomes]
rs12749113	0.89[ASN][1000 genomes]
rs12749224	0.91[ASN][1000 genomes]
rs1331707	0.83[AMR][1000 genomes]
rs1331718	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1412129	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1412130	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1412131	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1412132	0.84[AMR][1000 genomes]
rs1412133	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1412134	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1412135	0.84[AMR][1000 genomes]
rs1412137	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1888766	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1929622	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2039339	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2882993	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2989850	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3015126	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33944981	0.89[ASN][1000 genomes]
rs34146004	0.91[ASN][1000 genomes]
rs34510598	0.91[ASN][1000 genomes]
rs35352017	0.89[ASN][1000 genomes]
rs35676104	0.91[ASN][1000 genomes]
rs35706038	0.89[ASN][1000 genomes]
rs35733452	0.91[ASN][1000 genomes]
rs35963120	0.89[ASN][1000 genomes]
rs4414002	0.91[ASN][1000 genomes]
rs4630085	0.91[ASN][1000 genomes]
rs5012068	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6424649	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6661645	0.91[ASN][1000 genomes]
rs7546200	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7553187	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv870962	chr1:79755185-79835066	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv830337	chr1:79791879-79913241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv546633	chr1:79794719-79877035	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv871649	chr1:79807447-79924175	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79818800-79821400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:79819600-79821000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:79820400-79821200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:79820400-79821200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:79820400-79821400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:79820400-79821600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:79820600-79821000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:79820600-79821000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:79820600-79821400	Enhancers	Fetal Stomach	stomach
10	chr1:79820600-79821400	Enhancers	NHDF-Ad	bronchial
11	chr1:79820600-79821400	Enhancers	Osteobl	bone
12	chr1:79820600-79821600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:79820600-79821600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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