Variant report

Variant	rs3015178
Chromosome Location	chr9:72695637-72695638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2975903	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72685200-72695800	Weak transcription	Aorta	Aorta
2	chr9:72685200-72696000	Weak transcription	Right Atrium	heart
3	chr9:72688600-72696400	Enhancers	Ovary	ovary
4	chr9:72689400-72696200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:72690600-72696200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:72693400-72696600	Enhancers	Fetal Stomach	stomach
7	chr9:72693800-72695800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:72693800-72696400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:72693800-72696400	Enhancers	Fetal Muscle Leg	muscle
10	chr9:72693800-72696800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr9:72694000-72696000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:72694000-72696000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:72694000-72696200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:72694000-72696200	Enhancers	Lung	lung
15	chr9:72694000-72696400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:72694000-72696400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:72694000-72696800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr9:72694000-72696800	Enhancers	Adipose Nuclei	Adipose
19	chr9:72694200-72695800	Enhancers	Fetal Brain Male	brain
20	chr9:72694200-72696600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:72694200-72697000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:72694400-72696000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:72694400-72696400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr9:72694400-72696400	Enhancers	NHLF	lung
25	chr9:72694400-72696600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:72694400-72696600	Enhancers	NHDF-Ad	bronchial
27	chr9:72694400-72696800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:72694600-72696000	Enhancers	Liver	Liver
29	chr9:72694600-72696400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr9:72694600-72696600	Enhancers	HMEC	breast
31	chr9:72694600-72696800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:72694600-72696800	Enhancers	Osteobl	bone
33	chr9:72694600-72697600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:72694800-72695800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr9:72694800-72696000	Weak transcription	Right Ventricle	heart
36	chr9:72694800-72696600	Genic enhancers	HSMMtube	muscle
37	chr9:72694800-72697600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr9:72694800-72697800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr9:72694800-72704400	Enhancers	Rectal Smooth Muscle	rectum
40	chr9:72694800-72708200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr9:72694800-72721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:72695000-72695800	Enhancers	NH-A	brain
43	chr9:72695000-72696400	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr9:72695000-72698000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:72695000-72700000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr9:72695200-72695800	Enhancers	Brain Anterior Caudate	brain
47	chr9:72695200-72695800	Weak transcription	Brain Germinal Matrix	brain
48	chr9:72695200-72696000	Weak transcription	Left Ventricle	heart
49	chr9:72695200-72696400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:72695200-72696400	Enhancers	Fetal Lung	lung

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