Variant report

Variant	rs301749
Chromosome Location	chr1:216362987-216362988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr1:216362807-216363066	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000236292	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11120735	0.87[TSI][hapmap]
rs1115436	0.80[CEU][hapmap]
rs12091176	1.00[JPT][hapmap]
rs17649639	1.00[ASN][1000 genomes]
rs17651066	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs1830857	1.00[CHD][hapmap]
rs2926178	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs301736	0.80[CEU][hapmap]
rs301737	0.80[CEU][hapmap]
rs301742	0.80[CEU][hapmap]
rs301743	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs301744	0.80[CEU][hapmap]
rs301745	0.80[CEU][hapmap]
rs301746	1.00[AFR][1000 genomes]
rs301748	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs301751	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs301753	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs301755	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap]
rs301756	1.00[CEU][hapmap]
rs301757	1.00[CEU][hapmap]
rs3106400	1.00[AFR][1000 genomes]
rs368107	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs371947	0.80[CEU][hapmap];0.85[AMR][1000 genomes]
rs386851	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs400358	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs414373	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs419767	1.00[AFR][1000 genomes]
rs440416	1.00[AFR][1000 genomes]
rs446247	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs448588	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs452747	0.86[ASN][1000 genomes]
rs453273	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs532342	1.00[CHD][hapmap]
rs551895	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs594799	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs619629	1.00[AFR][1000 genomes]
rs619803	0.89[MKK][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs627143	0.86[EUR][1000 genomes]
rs637374	0.85[AMR][1000 genomes]
rs669825	1.00[AFR][1000 genomes]
rs676212	1.00[CEU][hapmap]
rs682319	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs687476	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7413858	1.00[CHD][hapmap];1.00[MKK][hapmap]
rs7532570	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv873176	chr1:216249570-216363137	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1006028	chr1:216268796-216432545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216358400-216367200	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links