Variant report

Variant	rs3019464
Chromosome Location	chr11:73668180-73668181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73662160..73664087-chr11:73665599..73668427,2	MCF-7	breast:
2	chr11:73666743..73668860-chr11:73692044..73694244,3	K562	blood:
3	chr11:73666457..73671520-chr11:73672404..73676950,7	K562	blood:
4	chr11:73660834..73662428-chr11:73666510..73669209,2	MCF-7	breast:
5	chr11:73666457..73670493-chr11:73673251..73675540,6	K562	blood:
6	chr11:73666483..73669471-chr16:88828358..88831254,2	MCF-7	breast:
7	chr11:73658467..73661374-chr11:73665406..73668182,2	MCF-7	breast:
8	chr11:73667291..73669436-chr11:73669915..73671843,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10437752	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1670539	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs935985	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs935988	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:73662400-73668200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:73663400-73670400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:73666800-73668200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:73667000-73668400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:73667000-73668800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:73667200-73669000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:73667400-73668800	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:73667400-73669800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:73667400-73672000	Weak transcription	HSMMtube	muscle
11	chr11:73667600-73668200	Enhancers	HepG2	liver
12	chr11:73667600-73669000	Weak transcription	K562	blood
13	chr11:73667600-73672200	Weak transcription	HSMM	muscle
14	chr11:73668000-73668200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:73668000-73668400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:73668000-73668800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:73668000-73669200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr11:73668000-73670000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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