Variant report

Variant	rs1670539
Chromosome Location	chr11:73637741-73637742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73629846..73633013-chr11:73635127..73638678,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10160362	0.96[ASN][1000 genomes]
rs10437752	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1122373	1.00[CHB][hapmap]
rs11235909	0.86[CHB][hapmap]
rs11235919	0.82[ASN][1000 genomes]
rs11235940	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs11235948	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11235956	0.85[ASN][1000 genomes]
rs12269892	0.91[CHB][hapmap]
rs12280222	1.00[CHB][hapmap]
rs12284235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12284670	1.00[CHB][hapmap]
rs12287418	0.84[ASN][1000 genomes]
rs12291665	0.85[ASN][1000 genomes]
rs12294934	1.00[CHB][hapmap]
rs12295206	1.00[CHB][hapmap]
rs12420040	0.86[ASN][1000 genomes]
rs12421959	0.96[ASN][1000 genomes]
rs17132368	0.86[CHB][hapmap]
rs17132495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2010583	1.00[CHB][hapmap]
rs2067913	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3019464	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3741138	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs3741139	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs3926010	1.00[ASN][1000 genomes]
rs7119602	1.00[CHB][hapmap]
rs73549968	0.84[ASN][1000 genomes]
rs935985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73596000-73640800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:73601000-73640400	Weak transcription	Stomach Mucosa	stomach
3	chr11:73602400-73644800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:73606800-73638200	Weak transcription	NHLF	lung
5	chr11:73613000-73640600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:73615400-73640800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:73615800-73641400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:73617600-73646000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:73618000-73646400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:73618400-73641600	Strong transcription	Placenta	Placenta
11	chr11:73618800-73638800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:73619600-73639800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr11:73620200-73640800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:73620200-73641400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:73620400-73641000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:73625200-73647200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:73625600-73646400	Strong transcription	Liver	Liver
18	chr11:73626200-73638200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:73626200-73638400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:73626600-73647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:73627600-73641400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:73628000-73646200	Strong transcription	Fetal Intestine Small	intestine
23	chr11:73628800-73646400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:73629400-73640800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:73630800-73637800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:73630800-73637800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:73630800-73637800	Weak transcription	NHEK	skin
28	chr11:73630800-73638000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:73630800-73638400	Weak transcription	Colonic Mucosa	Colon
30	chr11:73630800-73638400	Weak transcription	Gastric	stomach
31	chr11:73630800-73642200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:73631000-73637800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:73631000-73637800	Weak transcription	Fetal Heart	heart
34	chr11:73631000-73638000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:73631000-73638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:73631000-73638000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:73631000-73638000	Weak transcription	Brain Anterior Caudate	brain
38	chr11:73631000-73638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:73631000-73638000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:73631000-73638000	Weak transcription	HMEC	breast
41	chr11:73631000-73638200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:73631000-73638200	Weak transcription	Esophagus	oesophagus
43	chr11:73631000-73638200	Weak transcription	Fetal Kidney	kidney
44	chr11:73631000-73638200	Weak transcription	HUVEC	blood vessel
45	chr11:73631000-73638400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:73631000-73638400	Weak transcription	K562	blood
47	chr11:73631000-73638800	Weak transcription	Hela-S3	cervix
48	chr11:73631000-73647200	Weak transcription	Psoas Muscle	Psoas
49	chr11:73631200-73637800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:73631200-73637800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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