Variant report

Variant	rs10160362
Chromosome Location	chr11:73650922-73650923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73649521..73651075-chr11:73655497..73658125,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10437752	0.98[ASN][1000 genomes]
rs1122373	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11235909	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs11235919	0.82[ASN][1000 genomes]
rs11235940	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs11235948	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs11235956	0.85[ASN][1000 genomes]
rs12269892	0.91[CHB][hapmap]
rs12280222	1.00[CHB][hapmap]
rs12284235	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12284670	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs12287418	0.88[ASN][1000 genomes]
rs12291665	0.87[ASN][1000 genomes]
rs12294934	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12295206	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12420040	0.86[ASN][1000 genomes]
rs12421959	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1670539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17132368	0.86[CHB][hapmap]
rs17132495	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2010583	1.00[CHB][hapmap]
rs2067913	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3741138	0.93[CHB][hapmap];0.86[ASN][1000 genomes]
rs3741139	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs3926010	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs637028	0.93[CHD][hapmap]
rs7119602	1.00[CHB][hapmap]
rs73549968	0.84[ASN][1000 genomes]
rs935985	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs935988	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv3441543	chr11:73650332-73658331	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10160362	OMP	cis	parietal	SCAN
rs10160362	SERPINH1	cis	parietal	SCAN
rs10160362	MRPL48	cis	lymphoblastoid	seeQTL
rs10160362	MRPL48	cis	parietal	SCAN
rs10160362	C11orf59	cis	parietal	SCAN
rs10160362	UVRAG	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73633200-73652400	Weak transcription	Small Intestine	intestine
2	chr11:73639000-73653000	Weak transcription	K562	blood
3	chr11:73639400-73653200	Weak transcription	Gastric	stomach
4	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:73640400-73655000	Weak transcription	Brain Germinal Matrix	brain
6	chr11:73640400-73659200	Weak transcription	HepG2	liver
7	chr11:73640800-73652200	Weak transcription	Fetal Brain Female	brain
8	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
9	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:73642600-73652200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:73642600-73655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:73642600-73656200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:73642800-73653000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:73644000-73653000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:73644200-73652200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:73645400-73655200	Weak transcription	Brain Anterior Caudate	brain
17	chr11:73645600-73655000	Weak transcription	Adipose Nuclei	Adipose
18	chr11:73645600-73655600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:73645800-73655400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:73646200-73653600	Weak transcription	Left Ventricle	heart
21	chr11:73646200-73654400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:73646200-73655000	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:73646400-73653600	Weak transcription	Liver	Liver
24	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:73650600-73652200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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