Variant report

Variant	rs17132368
Chromosome Location	chr11:73518652-73518653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1122373	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11235909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235919	0.85[ASN][1000 genomes]
rs11235921	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235924	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235940	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11235941	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235944	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235948	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11235956	0.81[ASN][1000 genomes]
rs11823400	0.89[YRI][hapmap]
rs11827951	1.00[YRI][hapmap]
rs11828006	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12269892	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12280222	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12284235	0.86[CHB][hapmap]
rs12284670	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12291665	0.81[ASN][1000 genomes]
rs12294934	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12295206	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12420040	0.82[ASN][1000 genomes]
rs12575532	1.00[CEU][hapmap]
rs12577447	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1670539	0.86[CHB][hapmap]
rs17132305	1.00[CEU][hapmap]
rs17132408	1.00[YRI][hapmap]
rs17132421	1.00[YRI][hapmap]
rs17132422	0.82[YRI][hapmap]
rs17132438	1.00[YRI][hapmap]
rs17132488	1.00[YRI][hapmap]
rs17132495	0.86[CHB][hapmap]
rs2010583	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2067913	0.86[CHB][hapmap]
rs3741138	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3741139	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs56006060	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56380005	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58695771	0.87[ASN][1000 genomes]
rs59716840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60782792	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60793745	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7111424	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7116620	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7119602	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs73549968	0.84[ASN][1000 genomes]
rs935985	0.86[CHB][hapmap]
rs935988	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3426251	chr11:73461503-73538032	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73499600-73529200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:73499600-73549600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:73499600-73583800	Weak transcription	Aorta	Aorta
4	chr11:73499800-73529400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:73500000-73519000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:73500000-73520800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:73500000-73526800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:73500200-73518800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:73500200-73519200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:73500200-73526800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:73500200-73528200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:73500200-73574200	Weak transcription	Right Ventricle	heart
13	chr11:73500400-73537000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:73500400-73542200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:73500400-73571400	Weak transcription	Fetal Brain Male	brain
16	chr11:73500400-73583800	Weak transcription	Colonic Mucosa	Colon
17	chr11:73500600-73519000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:73500600-73522000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:73500600-73528000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:73500600-73538800	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:73500600-73549200	Weak transcription	Osteobl	bone
22	chr11:73500600-73553800	Weak transcription	Fetal Lung	lung
23	chr11:73500800-73524200	Weak transcription	A549	lung
24	chr11:73500800-73558800	Weak transcription	NHEK	skin
25	chr11:73503600-73532400	Weak transcription	Stomach Mucosa	stomach
26	chr11:73503600-73541200	Weak transcription	GM12878-XiMat	blood
27	chr11:73507600-73522000	Weak transcription	HSMM	muscle
28	chr11:73507800-73521800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:73508200-73529400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:73508400-73570600	Weak transcription	Psoas Muscle	Psoas
31	chr11:73508800-73519400	Weak transcription	Thymus	Thymus
32	chr11:73508800-73522000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:73508800-73522200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:73508800-73533800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:73508800-73538200	Weak transcription	Placenta	Placenta
36	chr11:73508800-73538200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:73508800-73541400	Weak transcription	Esophagus	oesophagus
38	chr11:73508800-73565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:73508800-73573800	Weak transcription	Spleen	Spleen
40	chr11:73508800-73575400	Weak transcription	Gastric	stomach
41	chr11:73509000-73518800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:73509000-73518800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:73509000-73518800	Weak transcription	Fetal Intestine Large	intestine
44	chr11:73509000-73519200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:73509000-73519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:73509000-73519400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:73509000-73521600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:73509000-73526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:73509000-73528400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:73509000-73529200	Weak transcription	Brain Inferior Temporal Lobe	brain

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