Variant report

Variant	rs7111424
Chromosome Location	chr11:73507834-73507835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73498691..73501899-chr11:73506861..73510927,5	MCF-7	breast:
2	chr11:73470692..73472512-chr11:73507097..73509835,2	MCF-7	breast:
3	chr11:73497703..73502258-chr11:73506479..73511022,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175581	Chromatin interaction
ENSG00000175582	Chromatin interaction
ENSG00000256034	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1122373	0.83[ASN][1000 genomes]
rs11235909	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235919	0.83[ASN][1000 genomes]
rs11235921	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235924	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235940	0.81[ASN][1000 genomes]
rs11828006	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269892	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12280222	0.85[ASN][1000 genomes]
rs12284670	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12294934	0.83[ASN][1000 genomes]
rs12295206	0.83[ASN][1000 genomes]
rs12577447	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17132368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2010583	0.83[ASN][1000 genomes]
rs3741139	0.82[ASN][1000 genomes]
rs56006060	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56380005	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58695771	0.85[ASN][1000 genomes]
rs59716840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60782792	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60793745	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7116620	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7119602	0.83[ASN][1000 genomes]
rs73549968	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3426251	chr11:73461503-73538032	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73499600-73529200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:73499600-73549600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:73499600-73583800	Weak transcription	Aorta	Aorta
4	chr11:73499800-73529400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:73500000-73516200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:73500000-73518200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:73500000-73519000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:73500000-73520800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:73500000-73526800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:73500200-73508200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:73500200-73518800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:73500200-73519200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:73500200-73526800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:73500200-73528200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:73500200-73574200	Weak transcription	Right Ventricle	heart
16	chr11:73500400-73508200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:73500400-73517600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:73500400-73537000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:73500400-73542200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:73500400-73571400	Weak transcription	Fetal Brain Male	brain
21	chr11:73500400-73583800	Weak transcription	Colonic Mucosa	Colon
22	chr11:73500600-73516600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:73500600-73516800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:73500600-73519000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:73500600-73522000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:73500600-73528000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:73500600-73538800	Weak transcription	Colon Smooth Muscle	Colon
28	chr11:73500600-73549200	Weak transcription	Osteobl	bone
29	chr11:73500600-73553800	Weak transcription	Fetal Lung	lung
30	chr11:73500800-73524200	Weak transcription	A549	lung
31	chr11:73500800-73558800	Weak transcription	NHEK	skin
32	chr11:73503600-73511600	Weak transcription	HepG2	liver
33	chr11:73503600-73532400	Weak transcription	Stomach Mucosa	stomach
34	chr11:73503600-73541200	Weak transcription	GM12878-XiMat	blood
35	chr11:73503800-73508200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:73503800-73509800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:73503800-73517000	Weak transcription	K562	blood
38	chr11:73504000-73517000	Weak transcription	Hela-S3	cervix
39	chr11:73504800-73509400	Strong transcription	Fetal Stomach	stomach
40	chr11:73506000-73509000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:73506800-73508800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:73506800-73509200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:73507000-73508000	Genic enhancers	Fetal Muscle Trunk	muscle
44	chr11:73507000-73508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:73507000-73508200	Enhancers	Brain Angular Gyrus	brain
46	chr11:73507000-73508600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:73507000-73508600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr11:73507000-73508600	Strong transcription	Thymus	Thymus
49	chr11:73507000-73508800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:73507000-73508800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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