Variant report

Variant	rs17132421
Chromosome Location	chr11:73580411-73580412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73567413..73569720-chr11:73578293..73583542,5	MCF-7	breast:
2	chr11:73578838..73580724-chr11:73585708..73589795,5	MCF-7	breast:
3	chr11:73575595..73577982-chr11:73579126..73581143,2	K562	blood:
4	chr11:73570812..73572958-chr11:73578378..73580627,2	K562	blood:
5	chr11:73572749..73574418-chr11:73579241..73582235,3	MCF-7	breast:
6	chr11:73579249..73581313-chr11:73590994..73593823,2	K562	blood:
7	chr11:73570812..73572971-chr11:73578378..73580940,3	K562	blood:
8	chr11:73569201..73571625-chr11:73578467..73580588,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000181924	Chromatin interaction
ENSG00000175575	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11235909	1.00[YRI][hapmap]
rs11821823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822264	1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11823400	1.00[ASW][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs11824937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825819	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826017	1.00[EUR][1000 genomes]
rs11827951	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11828393	1.00[EUR][1000 genomes]
rs11829005	1.00[EUR][1000 genomes]
rs11829012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12284670	0.81[LWK][hapmap];0.82[YRI][hapmap]
rs12295455	1.00[EUR][1000 genomes]
rs17132260	1.00[EUR][1000 genomes]
rs17132368	1.00[YRI][hapmap]
rs17132408	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132422	0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132438	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132488	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132555	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs45476292	1.00[EUR][1000 genomes]
rs45570334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893487	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939206	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56117405	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56168571	0.87[AMR][1000 genomes]
rs56237750	1.00[EUR][1000 genomes]
rs56340309	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56378817	1.00[EUR][1000 genomes]
rs56723437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56767203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59621450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60093210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60520592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085412	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61581672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61616797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61701946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110607	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73543094	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv983206	chr11:73565238-73580462	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73499600-73583800	Weak transcription	Aorta	Aorta
2	chr11:73500400-73583800	Weak transcription	Colonic Mucosa	Colon
3	chr11:73518400-73584000	Weak transcription	Pancreas	Pancrea
4	chr11:73537400-73582600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:73539200-73583800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:73541800-73583600	Weak transcription	Esophagus	oesophagus
7	chr11:73548800-73582000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:73549800-73583600	Weak transcription	GM12878-XiMat	blood
9	chr11:73550400-73582400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:73564400-73586000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:73567600-73582200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:73567800-73580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:73571400-73586000	Weak transcription	Right Atrium	heart
14	chr11:73571600-73586200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:73573000-73586200	Weak transcription	Fetal Brain Male	brain
16	chr11:73573200-73584000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:73575400-73586000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:73575600-73580600	Weak transcription	K562	blood
19	chr11:73575600-73580800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:73575600-73582600	Weak transcription	Fetal Kidney	kidney
21	chr11:73575600-73583200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:73575600-73583800	Weak transcription	Spleen	Spleen
23	chr11:73575800-73580600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:73575800-73581400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:73575800-73582200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:73575800-73583200	Weak transcription	Right Ventricle	heart
27	chr11:73575800-73583400	Weak transcription	Brain Angular Gyrus	brain
28	chr11:73575800-73583600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:73576000-73581000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:73576000-73582400	Weak transcription	Adipose Nuclei	Adipose
31	chr11:73576000-73582400	Weak transcription	Brain Substantia Nigra	brain
32	chr11:73576000-73582600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:73576400-73581200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:73576400-73581400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:73576400-73582400	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:73576400-73582600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:73576400-73583000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:73576400-73586000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:73576600-73580600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:73576600-73581000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:73576600-73582000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:73576600-73583200	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:73576600-73583200	Weak transcription	Left Ventricle	heart
44	chr11:73576600-73584000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:73577600-73582600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:73577800-73582400	Weak transcription	Lung	lung
47	chr11:73577800-73582800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:73578000-73582400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:73578000-73582600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:73578000-73582600	Weak transcription	Hela-S3	cervix

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