Variant report

Variant	rs11822264
Chromosome Location	chr11:73434883-73434884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73426792..73429606-chr11:73433522..73435254,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11821823	1.00[EUR][1000 genomes]
rs11822655	1.00[EUR][1000 genomes]
rs11823400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824937	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11825819	1.00[EUR][1000 genomes]
rs11826017	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11827951	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11828393	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11829005	1.00[EUR][1000 genomes]
rs11829012	1.00[EUR][1000 genomes]
rs12295455	1.00[EUR][1000 genomes]
rs17132260	1.00[EUR][1000 genomes]
rs17132408	1.00[EUR][1000 genomes]
rs17132421	1.00[EUR][1000 genomes]
rs17132422	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17132438	1.00[EUR][1000 genomes]
rs17132488	1.00[EUR][1000 genomes]
rs2462620	1.00[EUR][1000 genomes]
rs2512635	1.00[EUR][1000 genomes]
rs56117405	1.00[EUR][1000 genomes]
rs56237750	1.00[EUR][1000 genomes]
rs56378817	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	1.00[EUR][1000 genomes]
rs59610227	1.00[EUR][1000 genomes]
rs59621450	1.00[EUR][1000 genomes]
rs60093210	1.00[EUR][1000 genomes]
rs60520592	1.00[EUR][1000 genomes]
rs60924318	1.00[EUR][1000 genomes]
rs61581672	1.00[EUR][1000 genomes]
rs61616797	1.00[EUR][1000 genomes]
rs61701946	1.00[EUR][1000 genomes]
rs645579	1.00[EUR][1000 genomes]
rs675838	1.00[EUR][1000 genomes]
rs676346	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73382200-73436000	Weak transcription	Small Intestine	intestine
2	chr11:73382200-73441200	Weak transcription	Stomach Mucosa	stomach
3	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:73389000-73445400	Weak transcription	Fetal Brain Male	brain
5	chr11:73389200-73440200	Weak transcription	Right Ventricle	heart
6	chr11:73396000-73448000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:73400400-73449400	Weak transcription	Psoas Muscle	Psoas
8	chr11:73409600-73447800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:73411000-73447600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:73411000-73460000	Weak transcription	Colonic Mucosa	Colon
11	chr11:73413400-73440400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:73413400-73470800	Weak transcription	Esophagus	oesophagus
13	chr11:73413600-73447600	Weak transcription	Left Ventricle	heart
14	chr11:73415000-73436400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:73415000-73470200	Weak transcription	Aorta	Aorta
16	chr11:73417000-73440400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:73417200-73469600	Weak transcription	Fetal Kidney	kidney
18	chr11:73418200-73443400	Weak transcription	Brain Germinal Matrix	brain
19	chr11:73418400-73463200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:73422400-73443400	Weak transcription	Spleen	Spleen
21	chr11:73422400-73454000	Weak transcription	Gastric	stomach
22	chr11:73422800-73436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:73422800-73448000	Weak transcription	Fetal Brain Female	brain
24	chr11:73426800-73435800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:73427600-73445600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr11:73428000-73436200	Weak transcription	A549	lung
27	chr11:73428000-73445600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:73428400-73469800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:73428600-73440400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:73429000-73445400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:73429200-73439000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:73429600-73440800	Weak transcription	Brain Anterior Caudate	brain
33	chr11:73429800-73435800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:73429800-73436000	Weak transcription	K562	blood
35	chr11:73429800-73440800	Weak transcription	Brain Angular Gyrus	brain
36	chr11:73429800-73444800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:73429800-73446000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:73430000-73436000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:73430000-73440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:73430000-73443600	Weak transcription	Ovary	ovary
41	chr11:73430000-73445800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:73430000-73446200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:73430000-73450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:73430000-73451600	Weak transcription	HSMMtube	muscle
45	chr11:73430000-73460800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr11:73430200-73442200	Weak transcription	Pancreas	Pancrea
47	chr11:73430200-73446200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:73430200-73448000	Weak transcription	Lung	lung
49	chr11:73430400-73435000	Weak transcription	HSMM	muscle
50	chr11:73430400-73440400	Weak transcription	Brain Hippocampus Middle	brain

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