Variant report

Variant	rs11829005
Chromosome Location	chr11:73416619-73416620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73415553..73417778-chr11:73420155..73422839,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11821823	1.00[EUR][1000 genomes]
rs11822264	1.00[EUR][1000 genomes]
rs11822655	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11823400	1.00[EUR][1000 genomes]
rs11824937	1.00[EUR][1000 genomes]
rs11825819	1.00[EUR][1000 genomes]
rs11826017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11827951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829012	1.00[EUR][1000 genomes]
rs12295455	1.00[EUR][1000 genomes]
rs17132260	1.00[EUR][1000 genomes]
rs17132408	1.00[EUR][1000 genomes]
rs17132421	1.00[EUR][1000 genomes]
rs17132422	1.00[EUR][1000 genomes]
rs17132438	1.00[EUR][1000 genomes]
rs17132488	1.00[EUR][1000 genomes]
rs2462620	1.00[EUR][1000 genomes]
rs2512635	1.00[EUR][1000 genomes]
rs56117405	1.00[EUR][1000 genomes]
rs56237750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56378817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	1.00[EUR][1000 genomes]
rs59610227	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59621450	1.00[EUR][1000 genomes]
rs60093210	1.00[EUR][1000 genomes]
rs60520592	1.00[EUR][1000 genomes]
rs60924318	1.00[EUR][1000 genomes]
rs61581672	1.00[EUR][1000 genomes]
rs61616797	1.00[EUR][1000 genomes]
rs61701946	1.00[EUR][1000 genomes]
rs645579	1.00[EUR][1000 genomes]
rs675838	1.00[EUR][1000 genomes]
rs676346	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv390	chr11:73388188-73432899	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv975363	chr11:73411321-73426936	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73374400-73427200	Weak transcription	A549	lung
2	chr11:73382200-73436000	Weak transcription	Small Intestine	intestine
3	chr11:73382200-73441200	Weak transcription	Stomach Mucosa	stomach
4	chr11:73382400-73421600	Weak transcription	Gastric	stomach
5	chr11:73383400-73427200	Weak transcription	Fetal Heart	heart
6	chr11:73384000-73427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:73389000-73445400	Weak transcription	Fetal Brain Male	brain
9	chr11:73389200-73416800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:73389200-73427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:73389200-73440200	Weak transcription	Right Ventricle	heart
12	chr11:73390800-73429600	Weak transcription	NHLF	lung
13	chr11:73391000-73433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:73394400-73430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:73396000-73448000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:73397800-73426600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:73400400-73449400	Weak transcription	Psoas Muscle	Psoas
18	chr11:73400600-73421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:73400800-73422000	Weak transcription	Spleen	Spleen
20	chr11:73402000-73422200	Weak transcription	Hela-S3	cervix
21	chr11:73404400-73420200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:73404400-73424200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:73404400-73427400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:73404800-73420400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:73405000-73421800	Weak transcription	Pancreas	Pancrea
26	chr11:73405200-73416800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:73405200-73429600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:73405400-73416800	Weak transcription	K562	blood
29	chr11:73405400-73422000	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:73405400-73426400	Weak transcription	Brain Substantia Nigra	brain
31	chr11:73406400-73418600	Strong transcription	Placenta	Placenta
32	chr11:73406400-73419000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:73407000-73432000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:73407800-73418800	Strong transcription	Liver	Liver
35	chr11:73408200-73422800	Strong transcription	Osteobl	bone
36	chr11:73409600-73419400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr11:73409600-73447800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:73410000-73418400	Strong transcription	Fetal Stomach	stomach
39	chr11:73410000-73419400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:73410000-73419600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:73410000-73423000	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:73410000-73434200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:73410200-73418800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:73410200-73419000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:73410200-73421000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:73410200-73427400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:73410400-73419000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:73410600-73417200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr11:73410600-73418800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:73410600-73418800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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