Variant report

Variant	rs61701946
Chromosome Location	chr11:73491912-73491913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73490665..73492196-chr11:73612144..73614771,2	MCF-7	breast:
2	chr11:73490742..73492962-chr11:73586410..73589889,4	MCF-7	breast:
3	chr11:73470571..73474243-chr11:73488792..73493229,17	K562	blood:
4	chr11:73466132..73474322-chr11:73488493..73499248,27	K562	blood:
5	chr11:73451087..73453360-chr11:73490800..73493155,2	MCF-7	breast:
6	chr11:73433236..73435821-chr11:73490652..73492297,2	MCF-7	breast:
7	chr11:73469555..73474700-chr11:73488749..73494585,20	MCF-7	breast:
8	chr11:73491571..73493829-chr11:73529458..73531127,2	K562	blood:
9	chr11:73470195..73474536-chr11:73485650..73492680,30	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175575	Chromatin interaction
ENSG00000181924	Chromatin interaction
ENSG00000175582	Chromatin interaction
ENSG00000256034	Chromatin interaction
ENSG00000255928	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11821823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822264	1.00[EUR][1000 genomes]
rs11822655	1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11823400	1.00[EUR][1000 genomes]
rs11824937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826017	1.00[EUR][1000 genomes]
rs11827951	1.00[EUR][1000 genomes]
rs11828393	1.00[EUR][1000 genomes]
rs11829005	1.00[EUR][1000 genomes]
rs11829012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295455	1.00[EUR][1000 genomes]
rs17132260	1.00[EUR][1000 genomes]
rs17132408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2462620	1.00[EUR][1000 genomes]
rs2512635	1.00[EUR][1000 genomes]
rs45570334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56117405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56237750	1.00[EUR][1000 genomes]
rs56340309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56378817	1.00[EUR][1000 genomes]
rs56723437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56767203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59610227	1.00[EUR][1000 genomes]
rs59621450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60093210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60520592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61581672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61616797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs645579	1.00[EUR][1000 genomes]
rs675838	1.00[EUR][1000 genomes]
rs676346	1.00[EUR][1000 genomes]
rs73543094	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv3426251	chr11:73461503-73538032	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73491000-73494600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:73491000-73495200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:73491000-73498400	Weak transcription	Esophagus	oesophagus
4	chr11:73491000-73498600	Weak transcription	Aorta	Aorta
5	chr11:73491200-73492000	Enhancers	Placenta	Placenta
6	chr11:73491200-73492200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr11:73491200-73494200	Weak transcription	Fetal Intestine Large	intestine
8	chr11:73491200-73494200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:73491200-73494400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:73491200-73494800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:73491200-73495200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:73491200-73497800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:73491200-73498000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:73491200-73498000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:73491200-73498000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:73491200-73498000	Weak transcription	A549	lung
17	chr11:73491200-73498000	Weak transcription	HSMM	muscle
18	chr11:73491200-73498200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:73491200-73498200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:73491200-73498400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:73491200-73498400	Weak transcription	Thymus	Thymus
22	chr11:73491200-73498600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:73491400-73492200	Enhancers	K562	blood
24	chr11:73491400-73494000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:73491400-73494200	Weak transcription	HepG2	liver
26	chr11:73491400-73494400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:73491400-73494800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:73491400-73495000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr11:73491400-73495000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:73491400-73495000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:73491400-73495000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:73491400-73495200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:73491400-73495200	Weak transcription	NHEK	skin
34	chr11:73491400-73495400	Weak transcription	Fetal Thymus	thymus
35	chr11:73491400-73498200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:73491400-73498200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:73491400-73498200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:73491400-73498200	Weak transcription	Adipose Nuclei	Adipose
39	chr11:73491400-73498400	Weak transcription	Primary T cells from cord blood	blood
40	chr11:73491400-73498400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:73491600-73494800	Weak transcription	Hela-S3	cervix
42	chr11:73491800-73492200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:73491800-73494800	Weak transcription	Dnd41	blood
44	chr11:73491800-73498000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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