Variant report

Variant	rs56723437
Chromosome Location	chr11:73674991-73674992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MEF2A	chr11:73674810-73675336	K562	blood:	n/a	chr11:73675071-73675086
2	MAZ	chr11:73674445-73676069	IMR90	lung:	n/a	n/a
3	MEF2A	chr11:73674892-73675204	K562	blood:	n/a	chr11:73675071-73675086
4	CTCF	chr11:73674902-73675976	SK-N-SH	brain:	n/a	chr11:73675545-73675554 chr11:73675542-73675560

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73666457..73670493-chr11:73673251..73675540,6	K562	blood:

Variant related genes	Relation type
DNAJB13	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11821823	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11824937	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829012	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132408	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132421	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132422	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132438	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132488	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132555	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45476292	1.00[EUR][1000 genomes]
rs45570334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840703	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893487	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939206	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56117405	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56168571	1.00[AMR][1000 genomes]
rs56340309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56767203	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59621450	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60093210	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60520592	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085412	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61581672	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61616797	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61701946	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110607	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543094	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv1827060	chr11:73670645-73694754	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73669000-73685800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:73669800-73675200	Weak transcription	K562	blood
3	chr11:73669800-73681000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:73671000-73675200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:73672600-73675200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:73672800-73675200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:73672800-73675600	Weak transcription	HSMMtube	muscle
8	chr11:73672800-73675800	Weak transcription	Osteobl	bone
9	chr11:73672800-73684200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:73672800-73684800	Weak transcription	HSMM	muscle
11	chr11:73672800-73693200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:73674000-73685000	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:73674600-73675200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:73674600-73675200	Enhancers	HepG2	liver
15	chr11:73674600-73675600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:73674600-73684200	Weak transcription	Right Atrium	heart
17	chr11:73674800-73675000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:73674800-73675400	Enhancers	Right Ventricle	heart
19	chr11:73674800-73675800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr11:73674800-73676600	Enhancers	Fetal Heart	heart

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