Variant report

Variant	rs45476292
Chromosome Location	chr11:73714871-73714872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73714167..73717044-chr11:73777878..73780816,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11821823	1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11825819	1.00[EUR][1000 genomes]
rs17132408	1.00[EUR][1000 genomes]
rs17132421	1.00[EUR][1000 genomes]
rs17132422	1.00[EUR][1000 genomes]
rs17132438	1.00[EUR][1000 genomes]
rs17132488	1.00[EUR][1000 genomes]
rs17132555	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs45570334	1.00[EUR][1000 genomes]
rs55840703	1.00[EUR][1000 genomes]
rs55893487	1.00[EUR][1000 genomes]
rs55939206	1.00[EUR][1000 genomes]
rs56117405	1.00[EUR][1000 genomes]
rs56340309	1.00[EUR][1000 genomes]
rs56723437	1.00[EUR][1000 genomes]
rs56767203	1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	1.00[EUR][1000 genomes]
rs59621450	1.00[EUR][1000 genomes]
rs60093210	1.00[EUR][1000 genomes]
rs60520592	1.00[EUR][1000 genomes]
rs61085412	1.00[EUR][1000 genomes]
rs61581672	1.00[EUR][1000 genomes]
rs61616797	1.00[EUR][1000 genomes]
rs7110607	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73543094	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73703000-73719400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:73707400-73719800	Weak transcription	Dnd41	blood
3	chr11:73708000-73717600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:73708800-73729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:73709000-73724200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:73709400-73716600	Weak transcription	Small Intestine	intestine
7	chr11:73710000-73715800	Strong transcription	Fetal Muscle Leg	muscle
8	chr11:73710200-73728400	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:73710400-73715800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:73710600-73741800	Weak transcription	Fetal Kidney	kidney
11	chr11:73710600-73748800	Weak transcription	Fetal Brain Male	brain
12	chr11:73710800-73717000	Enhancers	K562	blood
13	chr11:73710800-73717800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:73710800-73722400	Weak transcription	NHDF-Ad	bronchial
15	chr11:73711000-73715000	Strong transcription	Fetal Stomach	stomach
16	chr11:73711000-73715400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:73711000-73715400	Strong transcription	Fetal Intestine Small	intestine
18	chr11:73711000-73718400	Strong transcription	Fetal Brain Female	brain
19	chr11:73711000-73721200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:73711000-73729200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:73711200-73715000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:73711200-73716200	Weak transcription	GM12878-XiMat	blood
23	chr11:73711200-73718200	Strong transcription	Brain Germinal Matrix	brain
24	chr11:73711400-73717000	Strong transcription	Stomach Smooth Muscle	stomach
25	chr11:73711400-73717400	Strong transcription	Right Ventricle	heart
26	chr11:73711600-73715200	Strong transcription	Fetal Thymus	thymus
27	chr11:73711600-73715400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:73711600-73715600	Genic enhancers	Primary T cells fromperipheralblood	blood
29	chr11:73711600-73715800	Strong transcription	Thymus	Thymus
30	chr11:73711600-73716600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:73711800-73716000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr11:73711800-73716200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:73711800-73716600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:73711800-73717200	Strong transcription	Placenta	Placenta
35	chr11:73711800-73718200	Strong transcription	Lung	lung
36	chr11:73711800-73718200	Strong transcription	Spleen	Spleen
37	chr11:73711800-73720200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:73711800-73729200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:73712000-73715000	Strong transcription	Ovary	ovary
40	chr11:73712000-73715200	Strong transcription	Fetal Lung	lung
41	chr11:73712000-73716600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:73712000-73717200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:73712000-73721200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:73712200-73721200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:73712200-73726800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:73712200-73743600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr11:73712200-73743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:73712400-73716000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr11:73712400-73721800	Weak transcription	Colonic Mucosa	Colon
50	chr11:73712600-73722400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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