Variant report

Variant	rs73543094
Chromosome Location	chr11:73660761-73660762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:73660268-73660777	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:73660722-73660772	A549	lung:	n/a
2	chr11:73660722-73660772	ECC-1	luminal epithelium:	n/a
3	chr11:73660722-73660772	HEK293	kidney:	embryo
4	chr11:73660722-73660772	Hela-S3	cervix:	n/a
5	chr11:73660722-73660772	Hepatocyte	liver:	n/a
6	chr11:73660722-73660772	GM12892	blood:	n/a
7	chr11:73660722-73660772	NH-A	brain:	n/a
8	chr11:73660722-73660772	HL-60	blood:	n/a
9	chr11:73660722-73660772	AG10803	skin:	n/a
10	chr11:73660722-73660772	SK-N-MC	brain:	n/a
11	chr11:73660722-73660772	HPAEpiC	pulmonary alveolar:	n/a
12	chr11:73660722-73660772	HAEpiC	amniotic membrane:	n/a
13	chr11:73660722-73660772	AG09309	skin:	n/a
14	chr11:73660722-73660772	PrEC	prostate:	n/a
15	chr11:73660722-73660772	LNCaP	prostate:	n/a
16	chr11:73660722-73660772	IMR90	lung:	fetal
17	chr11:73660722-73660772	NT2-D1	testis:	n/a
18	chr11:73660722-73660772	HEEpiC	esophagus:	n/a
19	chr11:73660722-73660772	HepG2	liver:	n/a
20	chr11:73660722-73660772	BE2_C	brain:	n/a
21	chr11:73660722-73660772	HCT-116	colon:	n/a
22	chr11:73660722-73660772	Jurkat	blood:	n/a
23	chr11:73660722-73660772	AG04450	lung:	fetal
24	chr11:73660722-73660772	NHDF-neo	bronchial:	n/a
25	chr11:73660722-73660772	Caco-2	colon:	n/a
26	chr11:73660722-73660772	K562	blood:	n/a
27	chr11:73660722-73660772	BJ	skin:	n/a
28	chr11:73660722-73660772	NB4	blood:	n/a
29	chr11:73660722-73660772	SKMC	muscle:	n/a
30	chr11:73660722-73660772	HMEC	breast:	n/a
31	chr11:73660722-73660772	SK-N-SH_RA	brain:	n/a
32	chr11:73660722-73660772	AoSMC	blood vessel:	n/a
33	chr11:73660722-73660772	PFSK-1	brain:	n/a
34	chr11:73660722-73660772	HCPEpiC	choroid plexus:	n/a
35	chr11:73660722-73660772	HUVEC	blood vessel:	n/a
36	chr11:73660722-73660772	RPTEC	kidney:	n/a
37	chr11:73660722-73660772	AG09319	gingival:	n/a
38	chr11:73660722-73660772	PANC-1	pancreas:	n/a
39	chr11:73660722-73660772	AG04449	skin:	fetal
40	chr11:73660722-73660772	NHBE	bronchial:	n/a
41	chr11:73660722-73660772	MCF10A-Er-Src	breast:	n/a
42	chr11:73660722-73660772	HCF	heart:	n/a
43	chr11:73660722-73660772	HRPEpiC	eye:	n/a
44	chr11:73660722-73660772	GM12891	blood:	n/a
45	chr11:73660722-73660772	GM19239	blood:	n/a
46	chr11:73660722-73660772	H1-hESC	embryonic stem cell:	embryo
47	chr11:73660722-73660772	ovcar-3	ovarian:	n/a
48	chr11:73660722-73660772	GM12878	blood:	n/a
49	chr11:73660722-73660772	SAEC	small airway:	n/a
50	chr11:73660722-73660772	MCF-7	breast:	n/a

No data

Variant related genes	Relation type
DNAJB13	TF binding region
DNAJB13	CpG island

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11821823	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11824937	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829012	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132408	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132421	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132422	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132438	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132488	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132555	1.00[EUR][1000 genomes]
rs45476292	1.00[EUR][1000 genomes]
rs45570334	1.00[EUR][1000 genomes]
rs55840703	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893487	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55939206	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56117405	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56340309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56723437	1.00[EUR][1000 genomes]
rs56767203	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59621450	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60093210	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60520592	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924318	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085412	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61581672	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61616797	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61701946	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110607	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73639400-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:73640800-73667000	Weak transcription	Pancreas	Pancrea
3	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:73650200-73666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:73650200-73667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:73657600-73662000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:73658200-73662000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:73658600-73662000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:73660200-73660800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:73660200-73660800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:73660400-73661000	Weak transcription	HepG2	liver
12	chr11:73660600-73667000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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