Variant report

Variant	rs7110607
Chromosome Location	chr11:73710478-73710479
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73699151..73702599-chr11:73708799..73712495,4	K562	blood:
2	chr11:73709291..73711416-chr11:73716050..73718311,2	K562	blood:
3	chr11:73706794..73708763-chr11:73709013..73711211,2	K562	blood:

Variant related genes	Relation type
ENSG00000256723	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11821823	1.00[EUR][1000 genomes]
rs11822794	1.00[EUR][1000 genomes]
rs11825819	1.00[EUR][1000 genomes]
rs12417424	0.96[LWK][hapmap]
rs12419308	0.93[LWK][hapmap]
rs17132408	1.00[EUR][1000 genomes]
rs17132421	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17132422	1.00[EUR][1000 genomes]
rs17132438	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17132488	1.00[EUR][1000 genomes]
rs17132555	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45476292	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs45570334	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55840703	1.00[EUR][1000 genomes]
rs55893487	1.00[EUR][1000 genomes]
rs55939206	1.00[EUR][1000 genomes]
rs56117405	1.00[EUR][1000 genomes]
rs56168571	0.87[AMR][1000 genomes]
rs56340309	1.00[EUR][1000 genomes]
rs56723437	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56767203	1.00[EUR][1000 genomes]
rs57579114	1.00[EUR][1000 genomes]
rs58792356	1.00[EUR][1000 genomes]
rs59621450	1.00[EUR][1000 genomes]
rs60093210	1.00[EUR][1000 genomes]
rs60520592	1.00[EUR][1000 genomes]
rs61085412	1.00[EUR][1000 genomes]
rs61581672	1.00[EUR][1000 genomes]
rs61616797	1.00[EUR][1000 genomes]
rs73543094	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:73702000-73711800	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:73702600-73711800	Weak transcription	Spleen	Spleen
4	chr11:73702800-73711400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:73703000-73719400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:73706000-73713800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:73706400-73711800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:73706800-73712000	Weak transcription	Fetal Lung	lung
9	chr11:73706800-73713600	Weak transcription	Liver	Liver
10	chr11:73706800-73713800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:73707000-73711200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:73707000-73714400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:73707200-73711000	Weak transcription	Fetal Brain Female	brain
14	chr11:73707200-73713600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:73707200-73714800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:73707400-73711400	Enhancers	Primary T cells from cord blood	blood
17	chr11:73707400-73711400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:73707400-73711600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:73707400-73711800	Enhancers	Primary B cells from cord blood	blood
20	chr11:73707400-73711800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:73707400-73713200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:73707400-73719800	Weak transcription	Dnd41	blood
23	chr11:73707600-73711600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr11:73707600-73711600	Weak transcription	Thymus	Thymus
25	chr11:73707600-73711800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr11:73708000-73717600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:73708200-73710800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:73708200-73711400	Weak transcription	Right Ventricle	heart
29	chr11:73708200-73713600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:73708600-73710800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:73708600-73711800	Weak transcription	Lung	lung
32	chr11:73708600-73712200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:73708600-73714800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:73708800-73710600	Weak transcription	Fetal Thymus	thymus
35	chr11:73708800-73711000	Weak transcription	Fetal Stomach	stomach
36	chr11:73708800-73711200	Enhancers	GM12878-XiMat	blood
37	chr11:73708800-73711800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:73708800-73712200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:73708800-73713400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:73708800-73714400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:73708800-73729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:73709000-73711400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr11:73709000-73711800	Weak transcription	Placenta	Placenta
44	chr11:73709000-73713200	Weak transcription	A549	lung
45	chr11:73709000-73714200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:73709000-73714400	Weak transcription	Gastric	stomach
47	chr11:73709000-73724200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:73709200-73712200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:73709200-73713000	Weak transcription	Aorta	Aorta
50	chr11:73709400-73710600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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